SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_076478171.1 NCBI__GCF_900156495.1:WP_076478171.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
30% identity, 74% coverage: 55:268/289 of query aligns to 5:215/215 of 4ymtC

query
sites
4ymtC
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R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
30% identity, 74% coverage: 55:267/289 of query aligns to 5:214/214 of 4ymwC

query
sites
4ymwC
F
 
F
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L

Query Sequence

>WP_076478171.1 NCBI__GCF_900156495.1:WP_076478171.1
MSSATVLYDAPGPKARIRNLAIAVVFGLVVVGVVTWVLVVLAGNDQLTGEKWSPFVHGDT
WTTYLLPGLWGTLKAAAVSIVLALLVGTVLGIGRLSDHRIVRGMSGVIVEVFRAIPVLIL
MIFAYYLFARYAVFPSSQLPFAAVVFGLTLYNGSVIAEIIRSGINSLPSGQAEAASAIGL
RKSQAMQLILLPQAVTAMLPALISQMVIALKDSALGYAIGYVEVVRSGIQSASYFGNYLP
ALVVVAAVMIVINFGLSVLATYLERRLRQGRRSSATRVPVELDKEPGLI

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory