SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_076579764.1 NCBI__GCF_001971705.1:WP_076579764.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

Q57764 Pyruvoyl-dependent arginine decarboxylase; PvlArgDC; EC 4.1.1.19 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
27% identity, 91% coverage: 2:145/159 of query aligns to 16:150/165 of Q57764

query
sites
Q57764
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N
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A
G
 
G
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S
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E
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A
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L
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N
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A
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G
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G
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L
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-
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K
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M
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G
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A
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Y
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2qqdC N47a mutant of pyruvoyl-dependent arginine decarboxylase from methanococcus jannashii (see paper)
27% identity, 91% coverage: 2:145/159 of query aligns to 10:144/159 of 2qqdC

query
sites
2qqdC
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x
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G
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A
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L
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N
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A
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G
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I
E
x
G
N
 
N
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V
N
x
A
L
 
L
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R
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I
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A
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Query Sequence

>WP_076579764.1 NCBI__GCF_001971705.1:WP_076579764.1
MSTIRIVWGAASAPTAMSSYDAALADAGVENYNLVSVSSVIPADTHVEAVGTAPDLGPAG
ERLTVVEARATVTGPGRASAALAWSQSVENGPGLFYETSGETDSEDVERRVLEGLAAGQE
LRDWEFADAQVATESIQAKSGEHTTALVLAVYGESEPIW

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory