SitesBLAST
Comparing WP_077276289.1 NCBI__GCF_001998885.1:WP_077276289.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
2c20A Crystal structure of udp-glucose 4-epimerase
59% identity, 100% coverage: 2:329/329 of query aligns to 2:329/329 of 2c20A
- active site: T117 (= T117), A118 (= A118), A119 (= A119), Y141 (= Y141), K145 (= K145), H184 (= H184)
- binding nicotinamide-adenine-dinucleotide: G7 (= G7), G10 (= G10), Y11 (= Y11), I12 (= I12), D31 (= D31), N32 (= N32), Q34 (≠ L34), T35 (= T35), G36 (= G36), D51 (= D51), L52 (≠ I52), F73 (= F73), A74 (= A74), A75 (= A75), N92 (= N92), Y141 (= Y141), K145 (= K145), Y168 (= Y168), F169 (= F169), V171 (= V171), H184 (= H184)
- binding zinc ion: E182 (= E182), H184 (= H184), E187 (= E187), H189 (= H189)
8wxkA Crystal structure of udp-glucose 4-epimerase (all4713) with udp- glucose and NAD from nostoc sp. Pcc 7120
50% identity, 97% coverage: 2:321/329 of query aligns to 7:328/332 of 8wxkA
- binding nicotinamide-adenine-dinucleotide: G12 (= G7), G15 (= G10), Y16 (= Y11), I17 (= I12), D36 (= D31), N37 (= N32), V39 (≠ L34), Y40 (≠ T35), G41 (= G36), D58 (= D51), T59 (≠ I52), F80 (= F73), S81 (≠ A74), A82 (= A75), N99 (= N92), S122 (= S115), T124 (= T117), Y148 (= Y141), K152 (= K145), Y175 (= Y168), A178 (≠ V171), H191 (= H184)
- binding uridine-5'-diphosphate-glucose: T124 (= T117), C125 (≠ A118), Y148 (= Y141), N177 (= N170), H196 (= H189), L197 (= L190), S213 (≠ T206), F215 (= F208), C226 (= C219), R228 (= R221), V266 (= V259), R289 (= R282), D292 (= D285)
2cnbA Trypanosoma brucei udp-galactose-4-epimerase in ternary complex with NAD and the substrate analogue udp-4-deoxy-4-fluoro-alpha-d-galactose (see paper)
45% identity, 99% coverage: 1:327/329 of query aligns to 3:365/366 of 2cnbA
- active site: S144 (≠ T117), A145 (= A118), A146 (= A119), Y169 (= Y141), K173 (= K145)
- binding nicotinamide-adenine-dinucleotide: G9 (= G7), G12 (= G10), Y13 (= Y11), I14 (= I12), D34 (= D31), S35 (≠ N32), V37 (≠ L34), G38 (≠ T35), D77 (= D51), V78 (≠ I52), M100 (≠ F73), C101 (≠ A74), A102 (= A75), L104 (≠ S77), N119 (= N92), S143 (= S116), S144 (≠ T117), Y169 (= Y141), K173 (= K145), Y196 (= Y168), F197 (= F169), A199 (≠ V171)
- binding uridine-5'-diphosphate-4-deoxy-4-fluoro-alpha-d-galactose: L104 (≠ S77), S144 (≠ T117), Y169 (= Y141), F197 (= F169), N198 (= N170), H217 (= H189), L218 (= L190), P238 (≠ T206), I239 (= I207), F240 (= F208), C251 (= C219), R253 (= R221), V297 (= V259), R320 (= R282), D323 (= D285)
1gy8C Trypanosoma brucei udp-galactose 4' epimerase (see paper)
46% identity, 99% coverage: 1:327/329 of query aligns to 3:369/370 of 1gy8C
- active site: S144 (≠ T117), A145 (= A118), A146 (= A119), Y170 (= Y141), K174 (= K145)
- binding nicotinamide-adenine-dinucleotide: G9 (= G7), G12 (= G10), Y13 (= Y11), I14 (= I12), D34 (= D31), S35 (≠ N32), L36 (= L33), V37 (≠ L34), G38 (≠ T35), D77 (= D51), V78 (≠ I52), M100 (≠ F73), C101 (≠ A74), A102 (= A75), L104 (≠ S77), N119 (= N92), S142 (= S115), S143 (= S116), S144 (≠ T117), Y170 (= Y141), K174 (= K145), Y197 (= Y168), A200 (≠ V171)
- binding uridine-5'-diphosphate: N199 (= N170), H218 (= H189), L219 (= L190), I222 (= I193), M241 (≠ V205), P242 (≠ T206), I243 (= I207), F244 (= F208), C255 (= C219), R257 (= R221), R324 (= R282), D327 (= D285)
4twrA Structure of udp-glucose 4-epimerase from brucella abortus
47% identity, 96% coverage: 2:316/329 of query aligns to 3:316/325 of 4twrA
- active site: S117 (≠ T117), C118 (≠ A118), A119 (= A119), Y141 (= Y141), K145 (= K145), H184 (= H184), H189 (= H189)
- binding nicotinamide-adenine-dinucleotide: G8 (= G7), G11 (= G10), F12 (≠ Y11), I13 (= I12), D32 (= D31), N33 (= N32), L34 (= L33), S35 (≠ L34), T36 (= T35), G37 (= G36), D51 (= D51), I52 (= I52), F73 (= F73), A74 (= A74), A75 (= A75), N92 (= N92), S115 (= S115), K145 (= K145), Y168 (= Y168), A171 (≠ V171), H184 (= H184)
- binding zinc ion: E182 (= E182), H184 (= H184), E187 (= E187), H189 (= H189)
7k3pA The structure of the udp-glc/glcnac 4-epimerase from the human pathogen campylobacter jejuni
44% identity, 97% coverage: 3:321/329 of query aligns to 4:327/329 of 7k3pA
- binding nicotinamide-adenine-dinucleotide: G8 (= G7), G11 (= G10), Y12 (= Y11), I13 (= I12), D32 (= D31), N33 (= N32), S35 (≠ L34), G37 (= G36), D57 (= D51), L58 (≠ I52), F79 (= F73), A80 (= A74), I83 (≠ S77), N98 (= N92), Y147 (= Y141), K151 (= K145), Y175 (= Y168), N177 (= N170), V178 (= V171)
8wovB Crystal structure of arabidopsis thaliana udp-glucose 4-epimerase 2 (atuge2) complexed with udp, g233a mutant (see paper)
41% identity, 99% coverage: 2:327/329 of query aligns to 4:341/341 of 8wovB
- binding nicotinamide-adenine-dinucleotide: G9 (= G7), G12 (= G10), Y13 (= Y11), I14 (= I12), D33 (= D31), N34 (= N32), D36 (≠ L34), N37 (≠ T35), S38 (≠ G36), D63 (= D51), L64 (≠ I52), F85 (= F73), A86 (= A74), G87 (≠ A75), K89 (≠ S77), N104 (= N92), S127 (= S115), S129 (≠ T117), Y153 (= Y141), K157 (= K145), Y181 (= Y168), P184 (≠ V171)
- binding uridine-5'-diphosphate: N183 (= N170), N203 (≠ H189), L204 (= L190), L219 (≠ V205), T220 (= T206), F222 (= F208), R235 (= R221), Y237 (= Y223), R297 (= R282), D300 (= D285)
2udpA Udp-galactose 4-epimerase complexed with udp-phenol (see paper)
39% identity, 99% coverage: 1:327/329 of query aligns to 1:336/338 of 2udpA
- active site: S124 (≠ T117), A125 (= A118), T126 (≠ A119), Y149 (= Y141), K153 (= K145), M189 (≠ I180)
- binding nicotinamide-adenine-dinucleotide: G7 (= G7), G10 (= G10), Y11 (= Y11), I12 (= I12), D31 (= D31), N32 (= N32), L33 (= L33), C34 (≠ L34), N35 (≠ T35), S36 (≠ G36), D58 (= D51), I59 (= I52), F80 (= F73), A81 (= A74), G82 (≠ A75), K84 (≠ S77), S122 (= S115), S124 (≠ T117), Y149 (= Y141), K153 (= K145), Y177 (= Y168)
- binding phenyl-uridine-5'-diphosphate: N179 (= N170), N199 (≠ H189), L200 (= L190), A216 (≠ T206), I217 (= I207), F218 (= F208), R231 (= R221), Y233 (= Y223), V269 (= V259), R292 (= R282), D295 (= D285)
1udcA Structure of udp-galactose-4-epimerase complexed with udp-mannose (see paper)
39% identity, 99% coverage: 1:327/329 of query aligns to 1:336/338 of 1udcA
- active site: S124 (≠ T117), A125 (= A118), T126 (≠ A119), Y149 (= Y141), K153 (= K145), M189 (≠ I180)
- binding nicotinamide-adenine-dinucleotide: G7 (= G7), G10 (= G10), Y11 (= Y11), I12 (= I12), D31 (= D31), N32 (= N32), C34 (≠ L34), N35 (≠ T35), S36 (≠ G36), D58 (= D51), I59 (= I52), F80 (= F73), A81 (= A74), G82 (≠ A75), K84 (≠ S77), S122 (= S115), Y149 (= Y141), K153 (= K145), Y177 (= Y168), P180 (≠ V171)
- binding uridine-5'-diphosphate-mannose: T126 (≠ A119), Y149 (= Y141), N179 (= N170), N199 (≠ H189), L200 (= L190), L215 (≠ V205), A216 (≠ T206), I217 (= I207), F218 (= F208), R231 (= R221), Y233 (= Y223), V269 (= V259), R292 (= R282)
P09147 UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Escherichia coli (strain K12) (see 10 papers)
39% identity, 99% coverage: 1:327/329 of query aligns to 1:336/338 of P09147
- YI 11:12 (= YI 11:12) binding NAD(+)
- DNLCNS 31:36 (≠ DNLLTG 31:36) binding NAD(+)
- DI 58:59 (= DI 51:52) binding NAD(+)
- FAGLK 80:84 (≠ FAASS 73:77) binding NAD(+)
- N99 (= N92) binding NAD(+)
- S124 (≠ T117) binding NAD(+); mutation to A: No major structural changes. Catalytic efficiency is very low and affinity binding is 21% of the wild-type enzyme.; mutation to T: No major structural changes. Catalytic efficiency is about 30% of that of the wild-type enzyme, and affinity binding is similar to that of the native enzyme.
- Y149 (= Y141) active site, Proton acceptor; binding NAD(+); mutation to F: No major structural changes. Catalytic efficiency is very low and affinity binding is 12% of the wild-type enzyme.
- K153 (= K145) binding NAD(+); mutation to A: Decreases the catalytic activity. Not reduced by sugars in the presence or absence of UMP. It contains very little NADH.; mutation to M: Decreases the catalytic activity. Not reduced by sugars in the presence or absence of UMP. It contains very little NADH.
- F178 (= F169) binding NAD(+)
- Y299 (≠ L289) mutation to C: Loss of epimerase activity with UDP-Gal by almost 5-fold, but it results in a gain of epimerase activity with uridine diphosphate N-acetylglucosamine (UDP-GlcNAc) by 230-fold with minimal changes in its three-dimensional structure.
1udaA Structure of udp-galactose-4-epimerase complexed with udp-4-deoxy-4- fluoro-alpha-d-galactose (see paper)
39% identity, 99% coverage: 1:327/329 of query aligns to 1:336/338 of 1udaA
- active site: S124 (≠ T117), A125 (= A118), T126 (≠ A119), Y149 (= Y141), K153 (= K145), M189 (≠ I180)
- binding nicotinamide-adenine-dinucleotide: G7 (= G7), G10 (= G10), Y11 (= Y11), I12 (= I12), D31 (= D31), N32 (= N32), L33 (= L33), C34 (≠ L34), N35 (≠ T35), S36 (≠ G36), D58 (= D51), I59 (= I52), F80 (= F73), A81 (= A74), G82 (≠ A75), K84 (≠ S77), S122 (= S115), Y149 (= Y141), K153 (= K145), Y177 (= Y168), P180 (≠ V171)
- binding uridine-5'-diphosphate-4-deoxy-4-fluoro-alpha-d-galactose: T126 (≠ A119), N179 (= N170), N199 (≠ H189), L200 (= L190), A216 (≠ T206), I217 (= I207), F218 (= F208), R231 (= R221), Y233 (= Y223), R292 (= R282), D295 (= D285), Y299 (≠ L289)
1naiA Udp-galactose 4-epimerase from escherichia coli, oxidized (see paper)
39% identity, 99% coverage: 1:327/329 of query aligns to 1:336/338 of 1naiA
- active site: S124 (≠ T117), A125 (= A118), T126 (≠ A119), Y149 (= Y141), K153 (= K145), M189 (≠ I180)
- binding nicotinamide-adenine-dinucleotide: G7 (= G7), G10 (= G10), Y11 (= Y11), I12 (= I12), D31 (= D31), N32 (= N32), L33 (= L33), C34 (≠ L34), N35 (≠ T35), S36 (≠ G36), D58 (= D51), I59 (= I52), F80 (= F73), A81 (= A74), G82 (≠ A75), K84 (≠ S77), Y149 (= Y141), K153 (= K145), Y177 (= Y168), P180 (≠ V171)
- binding 1,3-propandiol: N35 (≠ T35), K84 (≠ S77), E191 (= E182), P193 (= P186)
- binding uridine-5'-diphosphate: N179 (= N170), N199 (≠ H189), L200 (= L190), L215 (≠ V205), A216 (≠ T206), R231 (= R221), Y233 (= Y223), R292 (= R282)
1lrjA Crystal structure of e. Coli udp-galactose 4-epimerase complexed with udp-n-acetylglucosamine (see paper)
39% identity, 99% coverage: 1:327/329 of query aligns to 1:336/338 of 1lrjA
- active site: S124 (≠ T117), A125 (= A118), T126 (≠ A119), Y149 (= Y141), K153 (= K145), M189 (≠ I180)
- binding nicotinamide-adenine-dinucleotide: G7 (= G7), G10 (= G10), Y11 (= Y11), I12 (= I12), D31 (= D31), N32 (= N32), L33 (= L33), C34 (≠ L34), N35 (≠ T35), S36 (≠ G36), D58 (= D51), I59 (= I52), F80 (= F73), A81 (= A74), G82 (≠ A75), K84 (≠ S77), Y149 (= Y141), K153 (= K145), Y177 (= Y168), P180 (≠ V171)
- binding uridine-diphosphate-n-acetylglucosamine: V86 (= V79), S124 (≠ T117), F178 (= F169), N179 (= N170), L200 (= L190), L215 (≠ V205), A216 (≠ T206), F218 (= F208), R231 (= R221), Y233 (= Y223), V269 (= V259), R292 (= R282), D295 (= D285)
3enkA 1.9a crystal structure of udp-glucose 4-epimerase from burkholderia pseudomallei
42% identity, 99% coverage: 2:327/329 of query aligns to 6:339/340 of 3enkA
- active site: S127 (= S116), S128 (≠ T117), T130 (≠ A119), Y152 (= Y141), K156 (= K145)
- binding nicotinamide-adenine-dinucleotide: G11 (= G7), G14 (= G10), Y15 (= Y11), I16 (= I12), D35 (= D31), N36 (= N32), V38 (≠ L34), N39 (≠ T35), S40 (≠ G36), D62 (= D51), V63 (≠ I52), F84 (= F73), A85 (= A74), A86 (= A75), K88 (≠ S77), N103 (= N92), S126 (= S115), S128 (≠ T117), Y152 (= Y141), K156 (= K145), Y180 (= Y168), P183 (≠ V171)
- binding uridine-5'-diphosphate-glucose: T130 (≠ A119), N182 (= N170), N201 (≠ T188), N202 (≠ H189), L203 (= L190), R219 (≠ T206), V220 (≠ I207), F221 (= F208), R234 (= R221), Y236 (= Y223), V272 (= V259), R295 (= R282), D298 (= D285)
1kvrA Udp-galactose 4-epimerase complexed with udp-phenol (see paper)
39% identity, 99% coverage: 1:327/329 of query aligns to 1:336/338 of 1kvrA
- active site: A124 (≠ T117), A125 (= A118), T126 (≠ A119), Y149 (= Y141), K153 (= K145), M189 (≠ I180)
- binding nicotinamide-adenine-dinucleotide: G7 (= G7), G10 (= G10), Y11 (= Y11), I12 (= I12), D31 (= D31), N32 (= N32), C34 (≠ L34), N35 (≠ T35), S36 (≠ G36), D58 (= D51), I59 (= I52), F80 (= F73), A81 (= A74), G82 (≠ A75), K84 (≠ S77), S122 (= S115), S123 (= S116), Y149 (= Y141), K153 (= K145), Y177 (= Y168), P180 (≠ V171)
- binding uridine-5'-diphosphate: N179 (= N170), N198 (≠ T188), N199 (≠ H189), L200 (= L190), A216 (≠ T206), I217 (= I207), F218 (= F208), R231 (= R221), Y233 (= Y223), V269 (= V259), R292 (= R282), D295 (= D285)
1a9yA Udp-galactose 4-epimerase mutant s124a/y149f complexed with udp- glucose (see paper)
39% identity, 99% coverage: 1:327/329 of query aligns to 1:336/338 of 1a9yA
- active site: A124 (≠ T117), A125 (= A118), T126 (≠ A119), F149 (≠ Y141), K153 (= K145)
- binding nicotinamide-adenine-dinucleotide: G7 (= G7), G10 (= G10), Y11 (= Y11), I12 (= I12), D31 (= D31), N32 (= N32), C34 (≠ L34), N35 (≠ T35), S36 (≠ G36), D58 (= D51), I59 (= I52), F80 (= F73), A81 (= A74), G82 (≠ A75), K84 (≠ S77), S122 (= S115), S123 (= S116), F149 (≠ Y141), K153 (= K145), Y177 (= Y168), P180 (≠ V171)
- binding uridine-5'-diphosphate-glucose: A125 (= A118), T126 (≠ A119), N179 (= N170), N199 (≠ H189), L200 (= L190), A216 (≠ T206), I217 (= I207), F218 (= F208), R231 (= R221), Y233 (= Y223), R292 (= R282), D295 (= D285), Y299 (≠ L289)
6k0iA Crystal structure of udp-glucose 4-epimerase from bifidobacterium longum in complex with NAD+ and udp-glc (see paper)
40% identity, 99% coverage: 2:327/329 of query aligns to 2:335/335 of 6k0iA
- active site: S124 (≠ T117), A125 (= A118), T126 (≠ A119), Y149 (= Y141), K153 (= K145)
- binding nicotinamide-adenine-dinucleotide: G7 (= G7), G10 (= G10), F11 (≠ Y11), I12 (= I12), D31 (= D31), N32 (= N32), N35 (≠ T35), S36 (≠ G36), D58 (= D51), V59 (≠ I52), F80 (= F73), A81 (= A74), G82 (≠ A75), K84 (≠ S77), N99 (= N92), S122 (= S115), S123 (= S116), Y149 (= Y141), K153 (= K145), Y177 (= Y168), P180 (≠ V171)
- binding uridine-5'-diphosphate-glucose: K84 (≠ S77), S124 (≠ T117), Y149 (= Y141), F178 (= F169), N179 (= N170), A198 (≠ T188), N199 (≠ H189), L200 (= L190), Q216 (≠ T206), V217 (≠ I207), Y218 (≠ F208), R231 (= R221), Y233 (= Y223), V268 (= V259), R291 (= R282), D294 (= D285)
6k0hA Crystal structure of udp-glucose 4-epimerase from bifidobacterium longum in complex with NAD+ and udp-glcnac (see paper)
40% identity, 99% coverage: 2:327/329 of query aligns to 2:335/335 of 6k0hA
- active site: S124 (≠ T117), A125 (= A118), T126 (≠ A119), Y149 (= Y141), K153 (= K145)
- binding nicotinamide-adenine-dinucleotide: G7 (= G7), G10 (= G10), F11 (≠ Y11), I12 (= I12), D31 (= D31), N32 (= N32), G34 (≠ L34), N35 (≠ T35), S36 (≠ G36), D58 (= D51), V59 (≠ I52), F80 (= F73), A81 (= A74), G82 (≠ A75), K84 (≠ S77), N99 (= N92), S123 (= S116), Y149 (= Y141), K153 (= K145), Y177 (= Y168), P180 (≠ V171)
- binding uridine-diphosphate-n-acetylglucosamine: K84 (≠ S77), S124 (≠ T117), Y149 (= Y141), F178 (= F169), N179 (= N170), A198 (≠ T188), N199 (≠ H189), L200 (= L190), Q216 (≠ T206), V217 (≠ I207), Y218 (≠ F208), R231 (= R221), Y233 (= Y223), V268 (= V259), R291 (= R282), D294 (= D285)
6k0gA Crystal structure of udp-glucose 4-epimerase from bifidobacterium longum in complex with NAD+ and udp (see paper)
40% identity, 99% coverage: 2:327/329 of query aligns to 2:335/335 of 6k0gA
- active site: S124 (≠ T117), A125 (= A118), T126 (≠ A119), Y149 (= Y141), K153 (= K145)
- binding magnesium ion: E66 (≠ S59), H114 (= H107)
- binding nicotinamide-adenine-dinucleotide: G7 (= G7), G10 (= G10), F11 (≠ Y11), I12 (= I12), D31 (= D31), N32 (= N32), N35 (≠ T35), S36 (≠ G36), D58 (= D51), V59 (≠ I52), F80 (= F73), A81 (= A74), G82 (≠ A75), K84 (≠ S77), N99 (= N92), S122 (= S115), S123 (= S116), Y149 (= Y141), K153 (= K145), Y177 (= Y168), P180 (≠ V171)
- binding uridine-5'-diphosphate: N179 (= N170), A198 (≠ T188), N199 (≠ H189), L200 (= L190), Q216 (≠ T206), V217 (≠ I207), Y218 (≠ F208), R231 (= R221), Y233 (= Y223), V268 (= V259), R291 (= R282), D294 (= D285)
1hzjA Human udp-galactose 4-epimerase: accommodation of udp-n- acetylglucosamine within the active site (see paper)
41% identity, 99% coverage: 3:327/329 of query aligns to 4:343/345 of 1hzjA
- active site: S131 (≠ T117), A132 (= A118), T133 (≠ A119), Y156 (= Y141), K160 (= K145)
- binding nicotinamide-adenine-dinucleotide: G8 (= G7), G11 (= G10), Y12 (= Y11), I13 (= I12), D32 (= D31), N33 (= N32), H35 (≠ L34), N36 (≠ T35), D65 (= D51), I66 (= I52), F87 (= F73), A88 (= A74), G89 (≠ A75), K91 (≠ S77), S129 (= S115), S131 (≠ T117), Y156 (= Y141), K160 (= K145), Y184 (= Y168), P187 (≠ V171)
- binding uridine-diphosphate-n-acetylglucosamine: N186 (= N170), N206 (≠ H189), L207 (= L190), N223 (≠ T206), V224 (≠ I207), F225 (= F208), R238 (= R221), Y240 (= Y223), V276 (= V259), R299 (= R282), D302 (= D285)
Query Sequence
>WP_077276289.1 NCBI__GCF_001998885.1:WP_077276289.1
MTIAVLGGAGYIGSHFVKTLVESGQDTIVIDNLLTGHREAIHPDARFYEGDIRDKVFLSE
VFDKESIDGVVHFAASSLVGESVDNPLKYFNNNVYGTQIVLEVMKEHDVKAIVFSSTAAT
YGEPAELPITETTPTNPKNPYGESKLMMEKMMHWCDEAYGIKYVALRYFNVAGASLDTTI
GEDHHPETHLVPIILQAALGQREQVTIFGDDYATADGTCVRDYVHVVDLAQAHLLALDYL
KAGHDSTEFNLGSSEGFSVKEMVEEAKRVTQRPIKAVLGPRRAGDPAQLVASSEKAQTVL
GWKPQYTNVETIIKTAWKWHETHPNGYQK
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory