Comparing WP_078210938.1 NCBI__GCF_002017945.1:WP_078210938.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 8 hits to proteins with known functional sites (download)
3cuxA Atomic resolution structures of escherichia coli and bacillis anthracis malate synthase a: comparison with isoform g and implications for structure based drug design (see paper)
58% identity, 97% coverage: 15:533/533 of query aligns to 4:501/501 of 3cuxA
3cv1A Atomic resolution structures of escherichia coli and bacillis anthracis malate synthase a: comparison with isoform g and implications for structure based drug design (see paper)
51% identity, 99% coverage: 7:533/533 of query aligns to 2:528/529 of 3cv1A
3cuzA Atomic resolution structures of escherichia coli and bacillis anthracis malate synthase a: comparison with isoform g and implications for structure based drug design (see paper)
51% identity, 99% coverage: 7:533/533 of query aligns to 2:528/529 of 3cuzA
3cv2A Atomic resolution structures of escherichia coli and bacillis anthracis malate synthase a: comparison with isoform g and implications for structure based drug design (see paper)
52% identity, 96% coverage: 21:533/533 of query aligns to 11:523/524 of 3cv2A
P30952 Malate synthase 1; EC 2.3.3.9 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
52% identity, 94% coverage: 24:526/533 of query aligns to 30:534/554 of P30952
Sites not aligning to the query:
4ex4B The structure of glcb from mycobacterium leprae
25% identity, 71% coverage: 88:467/533 of query aligns to 237:649/721 of 4ex4B
5vfbA 1.36 angstrom resolution crystal structure of malate synthase g from pseudomonas aeruginosa in complex with glycolic acid.
22% identity, 70% coverage: 97:467/533 of query aligns to 250:649/724 of 5vfbA
5oasA Crystal structure of malate synthase g from pseudomonas aeruginosa in apo form. (see paper)
22% identity, 70% coverage: 97:467/533 of query aligns to 254:653/728 of 5oasA
>WP_078210938.1 NCBI__GCF_002017945.1:WP_078210938.1
MQTLTETTEKKWQFLNKEIAQHENILTEEAIDFLTALHENFNTKRLELLEARKAQQVQFD
NGVLPTFPLETKSIRESNWQAAPVPKDLIDRRVEITGPVDRKMVINALNSGAKTFMADFE
DSTSPTWDNIMEGQQNLKDAVNKTITLEDPIKNKKYALKDKTAVLIVRPRGLHLNEKHIL
IANEEASGSLIDFGLYAFHNHDQLARNGSAPYFYLPKLEHYLEARWWNEVFEFAQEYLGE
QHGTFKATVLIETITASFQLDEIIYELRDHIVGLNCGRWDYIFSYIKKFRNNPAFIVPNR
DQVTMTSPFMDAYSKLVIQRCHKRNIHAMGGMAAQIPIKNDPEANEIAFKKVIADKEREA
RNGHDGTWVAHPDLVPIAMKVFNENMMTKNHIHIKRADLHITEADLLQIPVGTITEEGIR
KNVNVAVLYITSWLNGQGAAAIHHLMEDAATAEISRSQLWQWLQNEVTLDSGEKLTTKLY
HRIALEEYEKIRKQVGDRAHEEENYILAEKLLDELVVNKKFVEFLTIPGYKYL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory