SitesBLAST
Comparing WP_078430830.1 NCBI__GCF_002019605.1:WP_078430830.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3dc2A Crystal structure of serine bound d-3-phosphoglycerate dehydrogenase from mycobacterium tuberculosis (see paper)
39% identity, 90% coverage: 42:510/524 of query aligns to 43:511/526 of 3dc2A
- active site: N96 (= N95), R230 (= R229), D254 (= D253), E259 (= E258), H277 (= H276)
- binding serine: Y458 (≠ H457), D460 (= D459), R461 (= R460), P462 (= P461), G463 (= G462), A464 (≠ V463), L465 (≠ I464), L484 (≠ V483)
3ddnB Crystal structure of hydroxypyruvic acid phosphate bound d-3- phosphoglycerate dehydrogenase in mycobacterium tuberculosis (see paper)
39% identity, 90% coverage: 42:510/524 of query aligns to 44:510/525 of 3ddnB
O43175 D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; Malate dehydrogenase; EC 1.1.1.95; EC 1.1.1.399; EC 1.1.1.37 from Homo sapiens (Human) (see 3 papers)
40% identity, 75% coverage: 1:394/524 of query aligns to 6:402/533 of O43175
- T78 (≠ V71) binding NAD(+)
- R135 (= R128) to W: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606949
- RI 155:156 (= RI 148:149) binding NAD(+)
- D175 (= D168) binding NAD(+)
- T207 (= T200) binding NAD(+)
- CAR 234:236 (= CAR 227:229) binding NAD(+)
- D260 (= D253) binding NAD(+)
- V261 (= V254) to M: in PHGDHD; results in a four-fold decrease in substrate affinity and a slight increase in maximal enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs267606947
- HLGA 283:286 (≠ HIAA 276:279) binding NAD(+)
- A373 (≠ S366) to T: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs201553627
- G377 (= G370) to S: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606948
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
- 2 modified: N-acetylalanine
- 425 V → M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907988
- 490 V → M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907987
6plfA Crystal structure of human phgdh complexed with compound 1 (see paper)
45% identity, 58% coverage: 1:302/524 of query aligns to 2:305/305 of 6plfA
7ewhA Crystal structure of human phgdh in complex with homoharringtonine (see paper)
46% identity, 56% coverage: 1:293/524 of query aligns to 1:295/302 of 7ewhA
- binding (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine: L146 (≠ V144), G147 (= G145), L148 (≠ F146), G149 (= G147), R150 (= R148), I151 (= I149), G152 (= G150), D170 (= D168), H201 (= H199), T202 (= T200), P203 (= P201)
6rihA Crystal structure of phgdh in complex with compound 9 (see paper)
46% identity, 56% coverage: 1:293/524 of query aligns to 1:295/302 of 6rihA
6rj5A Crystal structure of phgdh in complex with compound 39 (see paper)
46% identity, 56% coverage: 1:293/524 of query aligns to 1:295/301 of 6rj5A
6plgA Crystal structure of human phgdh complexed with compound 15 (see paper)
46% identity, 56% coverage: 1:293/524 of query aligns to 1:295/303 of 6plgA
7dkmA Phgdh covalently linked to oridonin (see paper)
46% identity, 56% coverage: 1:293/524 of query aligns to 2:296/306 of 7dkmA
- binding nicotinamide-adenine-dinucleotide: T74 (≠ V71), A102 (≠ T99), G148 (= G145), R151 (= R148), I152 (= I149), Y170 (≠ F167), D171 (= D168), P172 (= P169), I173 (≠ F170), H202 (= H199), T203 (= T200), P204 (= P201), T209 (= T206), C230 (= C227), A231 (= A228), R232 (= R229), H279 (= H276), G281 (≠ A278)
- binding (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one: C14 (vs. gap), K17 (vs. gap), I18 (vs. gap), E293 (≠ A290)
6rj2A Crystal structure of phgdh in complex with compound 40 (see paper)
46% identity, 55% coverage: 4:293/524 of query aligns to 1:292/299 of 6rj2A
- binding ~{N}-[(1~{R})-1-[4-(ethanoylsulfamoyl)phenyl]ethyl]-2-methyl-5-phenyl-pyrazole-3-carboxamide: G146 (= G147), I148 (= I149), Y166 (≠ F167), D167 (= D168), P168 (= P169), I169 (≠ F170), I170 (≠ L171), H198 (= H199), T199 (= T200), L208 (≠ I209), R228 (= R229)
6cwaA Crystal structure phgdh in complex with nadh and 3-phosphoglycerate at 1.77 a resolution (see paper)
46% identity, 55% coverage: 4:293/524 of query aligns to 3:294/299 of 6cwaA
- binding 1,4-dihydronicotinamide adenine dinucleotide: N96 (= N95), A100 (≠ T99), R149 (= R148), I150 (= I149), Y168 (≠ F167), D169 (= D168), P170 (= P169), I171 (≠ F170), H200 (= H199), T201 (= T200), P202 (= P201), T207 (= T206), C228 (= C227), A229 (= A228), R230 (= R229), H277 (= H276), G279 (≠ A278)
6rj3A Crystal structure of phgdh in complex with compound 15 (see paper)
46% identity, 55% coverage: 4:293/524 of query aligns to 3:294/297 of 6rj3A
6plfB Crystal structure of human phgdh complexed with compound 1 (see paper)
49% identity, 49% coverage: 37:293/524 of query aligns to 34:286/292 of 6plfB
- binding 4-{(1S)-1-[(5-chloro-6-{[(5S)-2-oxo-1,3-oxazolidin-5-yl]methoxy}-1H-indole-2-carbonyl)amino]-2-hydroxyethyl}benzoic acid: R141 (= R148), Y160 (≠ F167), D161 (= D168), P162 (= P169), I164 (≠ L171), L179 (= L186), T193 (= T200), P194 (= P201), S198 (≠ D205), L202 (≠ I209)
7cvpA The crystal structure of human phgdh from biortus.
49% identity, 41% coverage: 77:293/524 of query aligns to 33:249/254 of 7cvpA