SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_079648198.1 NCBI__GCF_900167915.1:WP_079648198.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

P33221 Formate-dependent phosphoribosylglycinamide formyltransferase; 5'-phosphoribosylglycinamide transformylase 2; Formate-dependent GAR transformylase; GAR transformylase 2; GART 2; GAR transformylase T; Non-folate glycinamide ribonucleotide transformylase; Phosphoribosylglycinamide formyltransferase 2; EC 6.3.1.21 from Escherichia coli (strain K12) (see 5 papers)
55% identity, 97% coverage: 1:382/395 of query aligns to 8:385/392 of P33221

query
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P33221

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EL 22:23 (= EL 14:15) binding N(1)-(5-phospho-beta-D-ribosyl)glycinamide
E82 (= E74) binding N(1)-(5-phospho-beta-D-ribosyl)glycinamide
R114 (= R106) binding ATP
K155 (= K147) binding ATP
SSGKGQ 160:165 (= SSGKGQ 152:157) binding ATP
G162 (= G154) mutation to I: Strong decrease in the reaction rate for the conversion of formate to FGAR and in the affinity for formate. 3- and 2-fold decrease in the affinity for ATP and GAR, respectively.
K179 (≠ D171) modified: N6-acetyllysine
EGVV 195:198 (≠ EAFI 187:190) binding ATP
E203 (= E195) binding ATP
E267 (= E259) binding Mg(2+)
E279 (= E271) binding Mg(2+)
D286 (= D278) binding N(1)-(5-phospho-beta-D-ribosyl)glycinamide
K355 (= K351) binding N(1)-(5-phospho-beta-D-ribosyl)glycinamide
RR 362:363 (= RR 358:359) binding N(1)-(5-phospho-beta-D-ribosyl)glycinamide

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

1kjiA Crystal structure of glycinamide ribonucleotide transformylase in complex with mg-amppcp (see paper)
55% identity, 97% coverage: 1:382/395 of query aligns to 7:382/389 of 1kjiA

query
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active site: E114 (≠ D107), K154 (= K147), S159 (= S152), G161 (= G154), E264 (= E259), E276 (= E271), D283 (= D278), T284 (= T279), R360 (= R359)
binding phosphomethylphosphonic acid adenylate ester: R113 (= R106), I152 (≠ V145), K154 (= K147), S159 (= S152), S160 (= S153), G161 (= G154), Q164 (= Q157), E192 (= E187), V195 (≠ I190), E200 (= E195), Q222 (= Q217), E264 (= E259), F266 (= F261), E276 (= E271)
binding magnesium ion: E264 (= E259), E276 (= E271)

1ez1A Structure of escherichia coli purt-encoded glycinamide ribonucleotide transformylase complexed with mg, amppnp, and gar (see paper)
55% identity, 97% coverage: 1:382/395 of query aligns to 7:382/389 of 1ez1A

query
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active site: E114 (≠ D107), K154 (= K147), S159 (= S152), G161 (= G154), E264 (= E259), E276 (= E271), D283 (= D278), T284 (= T279), R360 (= R359)
binding phosphoaminophosphonic acid-adenylate ester: R113 (= R106), I152 (≠ V145), K154 (= K147), S159 (= S152), S160 (= S153), G161 (= G154), E192 (= E187), V194 (≠ F189), V195 (≠ I190), F197 (= F192), E200 (= E195), Q222 (= Q217), E264 (= E259), F266 (= F261), E276 (= E271)
binding glycinamide ribonucleotide: G20 (= G13), E21 (= E14), L22 (= L15), E81 (= E74), I82 (≠ V75), S160 (= S153), D283 (= D278), K352 (= K351), R359 (= R358), R360 (= R359)
binding magnesium ion: E264 (= E259), E276 (= E271)

1eyzA Structure of escherichia coli purt-encoded glycinamide ribonucleotide transformylase complexed with mg and amppnp (see paper)
55% identity, 97% coverage: 1:382/395 of query aligns to 7:382/389 of 1eyzA

query
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1eyzA

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A

-

T

R

R

I

V

L

M

L

L

G

G

S

S

G

G

E

E

L

L

G

G

R

K

E

E

F

V

T

A

I

I

A

E

A

C

K

Q

R

R

L

L

G

G

A

V

Y

E

V

V

I

I

A

A

C

V

D

D

S

R

Y

Y

E

A

K

D

A

A

P

P

A

A

M

M

Q

H

V

V

A

A

D

H

D

R

Y

S

E

H

V

V

L

I

S

N

M

M

L

L

D

D

D

G

E

D

A

A

L

L

A

R

V

V

I

V

E

E

K

L

H

E

R

K

P

P

D

H

H

Y

I

I

V

V

P

P

E

E

V

I

E

E

A

A

I

I

R

A

T

T

E

D

V

M

L

L

L

I

D

Q

F

L

E

E

D

E

K

E

G

G

Y

L

S

N

V

V

P

P

S

C

A

A

R

R

A

A

T

T

M

K

L

L

T

T

M

M

N

N

R
|
R

D
x
E

R

G

I

I

R

R

D

R

V

L

A

A

N

E

E

E

L

L

G

Q

L

L

V

P

T

T

S

S

R

T

F

Y

L

R

Y

F

A

A

E

D

T

S

L

E

E

S

E

L

M

F

R

R

A

E

A

A

V

V

K

A

T

D

V

I

G

G

I

Y

P

P

C

C

V
x
I

V

V

K
|
K

P

P

V

V

M

M

S

S

S
|
S

G
|
G

K

K

G

G

Q
|
Q

S

T

I

F

V

I

T

R

A

S

E

A

E

E

A

Q

V

L

D

A

A

Q

A

A

W

W

D

K

Y

Y

A

A

V

Q

E

Q

G

G

M

G

R

R

G

A

D

G

R

R

Q

-

R

-

V

V

I

I

V

V

E
|
E

A

G

F

V

I
x
V

A

K

F
|
F

D

D

Y

F

E
|
E

I

I

T

T

L

L

T

T

I

V

R

S

T

A

R

V

Q

D

G

G

V

V

L

H

F

F

C

C

E

A

P

P

I

V

G

G

H

H

R

R

Q

Q

E

E

L

D

G

G

D

D

Y

Y

R

R

E

E

S

S

W

W

Q

Q

P

P

T

Q

P

Q

M

M

S

S

K

P

T

L

A

A

L

L

A

E

A

R

A

A

Q

Q

D

E

M

I

A

A

R

R

K

K

V

V

D

L

D

A

L

L

G

G

Y

Y

G

G

L

L

F

F

G

G

V

V

E
|
E

F

L

F
|
F

V

V

A

C

G

G

E

D

Q

E

V

V

I

I

F

F

S

S

E
|
E

L

V

S

S

P

P

R

R

P

P

H

H

D
|
D

T
|
T

G

G

M

M

V

V

T

T

L

L

I

I

S

S

Q

Q

N

D

L

L

T

S

E

E

F

F

D

A

L

L

H

H

A

V

R

R

A

A

I

F

L

L

G

G

L

L

P

P

I

V

P

G

H

G

I

I

H

R

L

Q

N

Y

G

G

A

P

S

A

A

A

S

S

A

A

V

V

L

I

L

L

A

P

D

Q

R

L

H

T

A

S

E

Q

D

N

F

V

R

T

I

F

E

D

G

N

L

V

A

Q

E

N

A

A

L

V

A

-

P

-

A

-

P

-

G

G

V

A

E

D

T

L

D

Q

V

I

R

R

L

L

F

F

S

G

K

K

P

P

V

E

T

I

R

D

P

G

N

S

R

R

R
|
R

M

L

G

G

V

V

A

A

L

L

A

A

L

T

A

A

R

-

E

E

G

S

T

V

A

V

D

D

D

A

A

I

R

E

A

R

A

A

A

K

R

H

A

A

active site: E114 (≠ D107), K154 (= K147), S159 (= S152), G161 (= G154), E264 (= E259), E276 (= E271), D283 (= D278), T284 (= T279), R360 (= R359)
binding phosphoaminophosphonic acid-adenylate ester: R113 (= R106), I152 (≠ V145), K154 (= K147), S159 (= S152), S160 (= S153), G161 (= G154), Q164 (= Q157), E192 (= E187), V195 (≠ I190), F197 (= F192), E200 (= E195), E264 (= E259), F266 (= F261), E276 (= E271)
binding magnesium ion: E264 (= E259), E276 (= E271)

1kjjA Crystal structure of glycniamide ribonucleotide transformylase in complex with mg-atp-gamma-s (see paper)
54% identity, 97% coverage: 1:382/395 of query aligns to 7:379/386 of 1kjjA

query
sites
1kjjA

M

L

R

R

P

P

V

A

A

A

-

T

R

R

I

V

L

M

L

L

G

G

S

S

G

G

E

E

L

L

G

G

R

K

E

E

F

V

T

A

I

I

A

E

A

C

K

Q

R

R

L

L

G

G

A

V

Y

E

V

V

I

I

A

A

C

V

D

D

S

R

Y

Y

E

A

K

D

A

A

P

P

A

A

M

M

Q

H

V

V

A

A

D

H

D

R

Y

S

E

H

V

V

L

I

S

N

M

M

L

L

D

D

D

G

E

D

A

A

L

L

A

R

V

V

I

V

E

E

K

L

H

E

R

K

P

P

D

H

H

Y

I

I

V

V

P

P

E

E

V

I

E

E

A

A

I

I

R

A

T

T

E

D

V

M

L

L

L

I

D

Q

F

L

E

E

D

E

K

E

G

G

Y

L

S

N

V

V

P

P

S

C

A

A

R

R

A

A

T

T

M

K

L

L

T

T

M

M

N

N

R
|
R

D
x
E

R

G

I

I

R

R

D

R

V

L

A

A

N

E

E

E

L

L

G

Q

L

L

V

P

T

T

S

S

R

T

F

Y

L

R

Y

F

A

A

E

D

T

S

L

E

E

S

E

L

M

F

R

R

A

E

A

A

V

V

K

A

T

D

V

I

G

G

I

Y

P

P

C

C

V
x
I

V

V

K
|
K

P

P

V

V

M

M

S

S

S
|
S

G
|
G

K

K

G

G

Q
|
Q

S

T

I

F

V

I

T

R

A

S

E

A

E

E

A

Q

V

L

D

A

A

Q

A

A

W

W

D

K

Y

Y

A

A

V

Q

E

Q

G

G

M

-

R

-

G

-

D

-

R

-

Q

G

R

R

V

V

I

I

V

V

E
|
E

A

G

F

V

I
x
V

A

K

F

F

D

D

Y

F

E
|
E

I

I

T

T

L

L

T

T

I

V

R

S

T

A

R

V

Q

D

G

G

V

V

L

H

F

F

C

C

E

A

P

P

I

V

G

G

H

H

R

R

Q
|
Q

E

E

L

D

G

G

D

D

Y

Y

R

R

E

E

S

S

W

W

Q

Q

P

P

T

Q

P

Q

M

M

S

S

K

P

T

L

A

A

L

L

A

E

A

R

A

A

Q

Q

D

E

M

I

A

A

R

R

K

K

V

V

D

L

D

A

L

L

G

G

Y

Y

G

G

L

L

F

F

G

G

V

V

E
|
E

F

L

F
|
F

V

V

A

C

G

G

E

D

Q

E

V

V

I

I

F

F

S

S

E
|
E

L

V

S

S

P

P

R

R

P

P

H

H

D
|
D

T
|
T

G

G

M

M

V

V

T

T

L

L

I

I

S

S

Q

Q

N

D

L

L

T

S

E

E

F

F

D

A

L

L

H

H

A

V

R

R

A

A

I

F

L

L

G

G

L

L

P

P

I

V

P

G

H

G

I

I

H

R

L

Q

N

Y

G

G

A

P

S

A

A

A

S

S

A

A

V

V

L

I

L

L

A

P

D

Q

R

L

H

T

A

S

E

Q

D

N

F

V

R

T

I

F

E

D

G

N

L

V

A

Q

E

N

A

A

L

V

A

-

P

-

A

-

P

-

G

G

V

A

E

D

T

L

D

Q

V

I

R

R

L

L

F

F

S

G

K

K

P

P

V

E

T

I

R

D

P

G

N

S

R

R

R
|
R

M

L

G

G

V

V

A

A

L

L

A

A

L

T

A

A

R

-

E

E

G

S

T

V

A

V

D

D

D

A

A

I

R

E

A

R

A

A

A

K

R

H

A

A

active site: E114 (≠ D107), K154 (= K147), S159 (= S152), G161 (= G154), E261 (= E259), E273 (= E271), D280 (= D278), T281 (= T279), R357 (= R359)
binding phosphothiophosphoric acid-adenylate ester: R113 (= R106), I152 (≠ V145), K154 (= K147), S159 (= S152), S160 (= S153), G161 (= G154), Q164 (= Q157), E189 (= E187), V192 (≠ I190), E197 (= E195), Q219 (= Q217), E261 (= E259), F263 (= F261), E273 (= E271)
binding magnesium ion: E261 (= E259), E273 (= E271)

1kj8A Crystal structure of purt-encoded glycinamide ribonucleotide transformylase in complex with mg-atp and gar (see paper)
54% identity, 97% coverage: 1:382/395 of query aligns to 7:379/386 of 1kj8A

query
sites
1kj8A

M

L

R

R

P

P

V

A

A

A

-

T

R

R

I

V

L

M

L

L

G

G

S

S

G
|
G

E
|
E

L
|
L

G

G

R

K

E

E

F

V

T

A

I

I

A

E

A

C

K

Q

R

R

L

L

G

G

A

V

Y

E

V

V

I

I

A

A

C

V

D

D

S

R

Y

Y

E

A

K

D

A

A

P

P

A

A

M

M

Q

H

V

V

A

A

D

H

D

R

Y

S

E

H

V

V

L

I

S

N

M

M

L

L

D

D

D

G

E

D

A

A

L

L

A

R

V

V

I

V

E

E

K

L

H

E

R

K

P

P

D

H

H

Y

I

I

V

V

P

P

E
|
E

V
x
I

E

E

A

A

I

I

R

A

T

T

E

D

V

M

L

L

L

I

D

Q

F

L

E

E

D

E

K

E

G

G

Y

L

S

N

V

V

P

P

S

C

A

A

R

R

A

A

T

T

M

K

L

L

T

T

M

M

N

N

R
|
R

D
x
E

R

G

I

I

R

R

D

R

V

L

A

A

N

E

E

E

L

L

G

Q

L

L

V

P

T

T

S

S

R

T

F

Y

L

R

Y

F

A

A

E

D

T

S

L

E

E

S

E

L

M

F

R

R

A

E

A

A

V

V

K

A

T

D

V

I

G

G

I

Y

P

P

C

C

V
x
I

V

V

K
|
K

P

P

V

V

M

M

S

S

S
|
S

G
|
G

K

K

G

G

Q
|
Q

S

T

I

F

V

I

T

R

A

S

E

A

E

E

A

Q

V

L

D

A

A

Q

A

A

W

W

D

K

Y

Y

A

A

V

Q

E

Q

G

G

M

-

R

-

G

-

D

-

R

-

Q

G

R

R

V

V

I

I

V

V

E
|
E

A

G

F

V

I
x
V

A

K

F
|
F

D

D

Y

F

E
|
E

I

I

T

T

L

L

T

T

I

V

R

S

T

A

R

V

Q

D

G

G

V

V

L

H

F

F

C

C

E

A

P

P

I

V

G

G

H

H

R

R

Q
|
Q

E

E

L

D

G
|
G

D

D

Y

Y

R

R

E

E

S

S

W

W

Q

Q

P

P

T

Q

P

Q

M

M

S

S

K

P

T

L

A

A

L

L

A

E

A

R

A

A

Q

Q

D

E

M

I

A

A

R

R

K

K

V

V

D

L

D

A

L

L

G

G

Y

Y

G

G

L

L

F

F

G

G

V

V

E
|
E

F

L

F
|
F

V

V

A

C

G

G

E

D

Q

E

V

V

I

I

F

F

S

S

E
|
E

L

V

S

S

P

P

R

R

P

P

H

H

D
|
D

T
|
T

G

G

M

M

V

V

T

T

L

L

I

I

S

S

Q

Q

N

D

L

L

T

S

E

E

F

F

D

A

L

L

H

H

A

V

R

R

A

A

I

F

L

L

G

G

L

L

P

P

I

V

P

G

H

G

I

I

H

R

L

Q

N

Y

G

G

A

P

S

A

A

A

S

S

A

A

V

V

L

I

L

L

A

P

D

Q

R

L

H

T

A

S

E

Q

D

N

F

V

R

T

I

F

E

D

G

N

L

V

A

Q

E

N

A

A

L

V

A

-

P

-

A

-

P

-

G

G

V

A

E

D

T

L

D

Q

V

I

R

R

L

L

F

F

S

G

K
|
K

P

P

V

E

T

I

R

D

P

G

N

S

R
|
R

M

L

G

G

V

V

A

A

L

L

A

A

L

T

A

A

R

-

E

E

G

S

T

V

A

V

D

D

D

A

A

I

R

E

A

R

A

A

A

K

R

H

A

A

active site: E114 (≠ D107), K154 (= K147), S159 (= S152), G161 (= G154), E261 (= E259), E273 (= E271), D280 (= D278), T281 (= T279), R357 (= R359)
binding adenosine-5'-triphosphate: R113 (= R106), I152 (≠ V145), K154 (= K147), S159 (= S152), S160 (= S153), G161 (= G154), Q164 (= Q157), E189 (= E187), V192 (≠ I190), F194 (= F192), E197 (= E195), Q219 (= Q217), G222 (= G220), E261 (= E259), F263 (= F261), E273 (= E271)
binding glycinamide ribonucleotide: G20 (= G13), E21 (= E14), L22 (= L15), E81 (= E74), I82 (≠ V75), S160 (= S153), D280 (= D278), K349 (= K351), R356 (= R358)
binding magnesium ion: E261 (= E259), E273 (= E271)

1kjqA Crystal structure of glycinamide ribonucleotide transformylase in complex with mg-adp (see paper)
54% identity, 97% coverage: 1:382/395 of query aligns to 7:381/388 of 1kjqA

query
sites
1kjqA

M

L

R

R

P

P

V

A

A

A

-

T

R

R

I

V

L

M

L

L

G

G

S

S

G

G

E

E

L

L

G

G

R

K

E

E

F

V

T

A

I

I

A

E

A

C

K

Q

R

R

L

L

G

G

A

V

Y

E

V

V

I

I

A

A

C

V

D

D

S

R

Y

Y

E

A

K

D

A

A

P

P

A

A

M

M

Q

H

V

V

A

A

D

H

D

R

Y

S

E

H

V

V

L

I

S

N

M

M

L

L

D

D

D

G

E

D

A

A

L

L

A

R

V

V

I

V

E

E

K

L

H

E

R

K

P

P

D

H

H

Y

I

I

V

V

P

P

E

E

V

I

E

E

A

A

I

I

R

A

T

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D

V

M

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L

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Q

F

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C

A

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x
E

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Y

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x
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K

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-

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-

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-

A

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-

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|
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L

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G

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-

E

E

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T

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H

A

A

active site: E114 (≠ D107), K154 (= K147), E263 (= E259), E275 (= E271), D282 (= D278), T283 (= T279), R359 (= R359)
binding adenosine-5'-diphosphate: R113 (= R106), I152 (≠ V145), K154 (= K147), E191 (= E187), V193 (≠ F189), V194 (≠ I190), F196 (= F192), E199 (= E195), Q221 (= Q217), F265 (= F261), E275 (= E271)
binding magnesium ion: E263 (= E259), E275 (= E271)

O58056 Formate-dependent phosphoribosylglycinamide formyltransferase; 5'-phosphoribosylglycinamide transformylase 2; Formate-dependent GAR transformylase; GAR transformylase 2; GART 2; Non-folate glycinamide ribonucleotide transformylase; Phosphoribosylglycinamide formyltransferase 2; EC 6.3.1.21 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
45% identity, 92% coverage: 6:369/395 of query aligns to 18:393/430 of O58056

query
sites
O58056

R

K

I

I

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L

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G

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S

G

G

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E

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L

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P

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M

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Q

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A

A

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S

N

M

M

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D

A

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A

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P

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H

A

I

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P

E

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A

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F

D

E

F

F

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E

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K

D

G

G

Y

Y

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A

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A

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L

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R118 (= R106) binding ATP
K159 (= K147) binding ATP
EEHI 199:202 (≠ EAFI 187:190) binding ATP
E207 (= E195) binding ATP

2dwcB Crystal structure of probable phosphoribosylglycinamide formyl transferase from pyrococcus horikoshii ot3 complexed with adp
44% identity, 92% coverage: 6:369/395 of query aligns to 20:382/409 of 2dwcB

query
sites
2dwcB

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K

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M

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D

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A

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E

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E

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L

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Y

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A

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x
H

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K

P

A

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I

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M

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-

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-

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-

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G

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A

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A

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Y

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x
H

I
|
I

A

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F
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F

D

D

Y

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E
|
E

I

V

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T

L

E

L

L

T

A

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R

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H

-

F

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N

G

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L

I

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-

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F

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C

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E

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P

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G

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H

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Y

Q

Q

E

I

L

D

G

G

D

D

Y

Y

R

H

E

A

S

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W

W

Q

Q

P

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T

A

P

E

M

I

S

S

K

E

T

K

A

A

L

E

A

R

A

E

A

V

Q

Y

D

R

M

I

A

A

R

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K

R

V

I

V

T

D

D

D

V

L

L

G

G

Y

L

G

G

L

I

F

F

G

G

V

V

E
|
E

F

M

F
|
F

V

V

A

K

G

G

E

D

Q

K

V

V

I

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F

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S

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E
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E

L

V

S

S

P

P

R

R

P

P

H

H

D
|
D

T
|
T

G

G

M

M

V

V

T

T

L

L

I

A

S

S

Q

H

-

P

N

G

L

F

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S

E

E

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F

D

A

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L

H

H

A

L

R

R

A

A

I

V

L

L

G

G

L

L

P

P

I

I

P

P

H

G

I

E

H

W

L

V

N

D

G

G

-

Y

-

R

-

L

-

F

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P

-

M

-

L

-

I

A

P

S

A

A

A

S

T

A

H

V

V

L

I

L

K

A

A

D

K

R

V

H

S

A

G

E

Y

D

S

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P

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R

I

F

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R

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G

L

L

A

V

E

K

A

A

L

L

A

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P

-

A

V

P

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G

N

V

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E

-

T

A

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T

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L

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F

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G

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K

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R
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L

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A

A

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L

A

A

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W

A

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E

D

active site: E265 (= E259), E277 (= E271), D284 (= D278), T285 (= T279), R372 (= R359)
binding adenosine-5'-diphosphate: R120 (= R106), H159 (≠ V145), K161 (= K147), H190 (≠ F189), I191 (= I190), F193 (= F192), E196 (= E195), F267 (= F261), E277 (= E271)

3aw8A Crystal structure of n5-carboxyaminoimidazole ribonucleotide synthetase from thermus thermophilus hb8
30% identity, 90% coverage: 17:370/395 of query aligns to 12:339/360 of 3aw8A

query
sites
3aw8A

R

R

E

M

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L

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A

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L

A

A

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Y

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L

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I

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A

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C

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E

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E

A

A

P

C

A

A

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G

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Q

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V

A

G

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E

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-

Y

L

E

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M

F

L

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D

D

D

E

E

G

A

A

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A

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F

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A

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E

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G

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-

D

A

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E

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A

N

I

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E

E

V

A

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A

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R

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R

F

L

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E

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G

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R

G

-

Y

L

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Y

P

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S

P

A

A

R

K

A

A

T

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M

-

L

L

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E

M

V

N

A

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Q

D

D

R

R

I

L

R

R

D

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A

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A

F

N

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G

L

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L

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F

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Y

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A

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x
L

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K

P

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-

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G

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Q

S

A

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E

E

E

A

A

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L

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E

A

A

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L

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A

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I
x
V

A

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F

F

D

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Y

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E
|
E

I

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L

L

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R

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Q

T

G

G

-

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V

L

A

F

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P

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x
H

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W

L

G

G

G

D

I

Y

L

R

R

E

L

S

S

W

L

Q

A

P

P

T

A

P

P

M

G

S

A

K

S

T

E

A

A

L

L

-

Q

A

K

A

A

Q

E

D

A

M

Y

A

A

R

L

K

R

V

A

V

M

D

E

D

A

L

L

G

D

G

Y

Y

V

G

G

L

V

F

L

G

A

V

L

E
|
E

F

F

F
|
F

V

Q

A

V

G

G

E

E

Q

E

V

L

I

L

F

F

S

N

E
|
E

L

M

S

A

P

P

R

R

P

V

H

H

D
x
N

T
x
S

G

G

M

H

V

W

T

T

L

I

I

E

S

G

Q

A

N

E

L

T

T

S

E

Q

F

F

D

E

L

N

H

H

A

L

R

R

A

A

I

V

L

L

G

G

L

L

P

P

I

L

P

G

H

S

I

T

H

A

L

P

N

R

G

G

A

Q

S

S

A

A

S

M

A

V

V

N

L

L

L

I

A

G

D

E

R

K

-

P

H

F

A

A

E

E

D

V

F

L

R

K

I

V

E

E

G

G

L

-

A

-

E

-

A

-

L

-

A

-

P

-

A

-

P

-

G

-

V

-

E

-

T

A

D

H

V

L

R

H

L

W

F

Y

S

G

K

K

P

A

V

V

T

-

R

R

P

P

N

G

R

R

R
x
K

M

V

G

G

V

-

A

H

L

I

A

T

L

L

A

R

R

R

E

D

G

G

active site: E240 (= E259), E252 (= E271), N259 (≠ D278), S260 (≠ T279), K329 (≠ R359)
binding adenosine monophosphate: L135 (≠ V145), K137 (= K147), Q142 (= Q157), F168 (= F189), V169 (≠ I190), E174 (= E195), H197 (≠ Q217), F242 (= F261), E252 (= E271)

4ma0A The crystal structure of phosphoribosylaminoimidazole carboxylase atpase subunit of francisella tularensis subsp. Tularensis schu s4 in complex with partially hydrolysed atp
29% identity, 75% coverage: 6:302/395 of query aligns to 2:290/366 of 4ma0A

query
sites
4ma0A

R

K

I

I

L

G

L

I

G

G

S

A

G

G

E

Q

L

L

G

A

R

R

E

M

F

L

T

S

I

L

A

A

A

G

K

T

R

P

L

L

G

G

A

L

-

E

-

F

Y

H

V

C

I

L

A

G

C

K

D

N

S

G

Y

D

E

C

K

A

A

E

P

E

A

V

M

V

Q

K

V

T

A

V

D

T

D

D

Y

I

E

E

V

L

L

T

S

K

M

V

L

N

D

D

D

V

E

V

A

A

L

W

A

A

A

K

V

-

I

-

E

-

K

-

H

-

R

Q

P

F

D

D

H

V

I

I

V

T

P

F

E

E

V

N

E

E

A

N

I

I

R

S

T

H

E

E

V

-

L

L

L

I

D

K

F

A

E

I

D

N

K

H

G

E

Y

V

S

S

V

V

V

Y

P

P

S

S

A

A

R

K

A

A

T

-

M

-

L

I

T

A

M

I

N

S

R

Q

D

D

R

R

I

L

R

L

D

E

V

K

A

S

-

F

A

M

N

Q

E

D

L

H

G

G

L

I

V

A

T

T

S

A

R

K

F

F

L

V

Y

N

A

I

E

D

T

S

L

L

E

A

E

K

M

L

R

Q

A

S

A

A

V

V

K

D

T

D

V

H

G

G

I

L

P

P

C

A

V
x
I

V

L

K
|
K

P

T

V

R

-

R

M

F

S

G

S
x
Y

S

D

G
|
G

K

K

G

G

Q

Q

S

F

I

V

V

I

T

R

A

S

E

Q

E

E

A

D

V

I

D

T

A

K

A

A

W

W

D

D

Y

V

A

L

V

K

E

D

G

A

M

P

R

D

G

G

D

-

R

-

Q

-

R

-

V

L

I

I

V

Y

E
|
E

A
|
A

F
|
F

I
x
V

A

D

F

F

D

D

Y

Y

E
|
E

I

V

T

S

L

Q

L

I

T

C

I

T

R

A

T

D

R

L

Q

K

G

G

V

N

L

I

F

A

C

F

E

Y

P

P

I

L

G

A

-

R

-

N

-

T

H
|
H

R

K

Q

Q

E

-

L

-

G

G

D

I

Y

I

R

V

E

E

S

S

W

-

Q

-

P

E

T

A

P

P

M

F

S

E

K

N

T

V

A

V

L

L

A

A

-

E

A

K

A

A

Q

Q

D

Q

M

I

A

A

R

K

K

I

V

L

V

V

D

K

D

E

L

F

G

A

G

Y

Y

V

G

G

L

T

F

L

G

A

V

I

E
|
E

F

F

F
|
F

V

V

A

K

G

G

E

D

Q

E

V

L

I

I

F

V

S

N

E
|
E

L

I

S

A

P

P

R

R

P

V

H

H

D
x
N

T
x
S

G

G

M

H

V

W

T

S

L

I

I

D

S

G

Q

A

N

V

L

T

T

S

E

Q

F

F

D

E

L

N

H

H

A

V

R

R

A

A

I

I

L

A

G

G

L

L

active site: Y144 (≠ S152), G146 (= G154), E247 (= E259), E259 (= E271), N266 (≠ D278), S267 (≠ T279)
binding adenosine monophosphate: I136 (≠ V145), K138 (= K147), E175 (= E187), A176 (= A188), F177 (= F189), V178 (≠ I190), E183 (= E195), H206 (= H215), F249 (= F261), E259 (= E271)

Sites not aligning to the query:

active site: 335

5jqwA The crystal structure of phosphoribosylaminoimidazole carboxylase atpase subunit of francisella tularensis subsp. Tularensis schu s4 in complex with adp
29% identity, 75% coverage: 6:302/395 of query aligns to 2:290/365 of 5jqwA

query
sites
5jqwA

R

K

I

I

L

G

L

I

G

G

S

A

G

G

E

Q

L

L

G

A

R

R

E

M

F

L

T

S

I

L

A

A

A

G

K

T

R

P

L

L

G

G

A

L

-

E

-

F

Y

H

V

C

I

L

A

G

C

K

D

N

S

G

Y

D

E

C

K

A

A

E

P

E

A

V

M

V

Q

K

V

T

A

V

D

T

D

D

Y

I

E

E

V

L

L

T

S

K

M

V

L

N

D

D

D

V

E

V

A

A

L

W

A

A

A

K

V

-

I

-

E

-

K

-

H

-

R

Q

P

F

D

D

H

V

I

I

V

T

P

F

E

E

V

N

E

E

A

N

I

I

R

S

T

H

E

E

V

-

L

L

L

I

D

K

F

A

E

I

D

N

K

H

G

E

Y

V

S

S

V

V

V

Y

P

P

S

S

A

A

R

K

A

A

T

-

M

-

L

I

T

A

M

I

N

S

R

Q

D

D

R
|
R

I

L

R

L

D

E

V

K

A

S

-

F

A

M

N

Q

E

D

L

H

G

G

L

I

V

A

T

T

S

A

R

K

F

F

L

V

Y

N

A

I

E

D

T

S

L

L

E

A

E

K

M

L

R

Q

A

S

A

A

V

V

K

D

T

D

V

H

G

G

I

L

P

P

C

A

V

I

V

L

K
|
K

P

T

V

R

-

R

M

F

S
x
G

S
x
Y

S
x
D

G
|
G

K

K

G

G

Q

Q

S

F

I

V

V

I

T

R

A

S

E

Q

E

E

A

D

V

I

D

T

A

K

A

A

W

W

D

D

Y

V

A

L

V

K

E

D

G

A

M

P

R

D

G

G

D

-

R

-

Q

-

R

-

V

L

I

I

V

Y

E

E

A

A

F

F

I
x
V

A

D

F

F

D

D

Y

Y

E
|
E

I

V

T

S

L

Q

L

I

T

C

I

T

R

A

T

D

R

L

Q

K

G

G

V

N

L

I

F

A

C

F

E

Y

P

P

I

L

G

A

-

R

-

N

-

T

H
|
H

R

K

Q

Q

E

-

L

-

G

G

D

I

Y

I

R

V

E

E

S

S

W

-

Q

-

P

E

T

A

P

P

M

F

S

E

K

N

T

V

A

V

L

L

A

A

-

E

A

K

A

A

Q

Q

D

Q

M

I

A

A

R

K

K

I

V

L

V

V

D

K

D

E

L

F

G

A

G

Y

Y

V

G

G

L

T

F

L

G

A

V

I

E
|
E

F

F

F
|
F

V

V

A

K

G

G

E

D

Q

E

V

L

I

I

F

V

S

N

E
|
E

L

I

S

A

P

P

R

R

P

V

H

H

D
x
N

T
x
S

G

G

M

H

V

W

T

S

L

I

I

D

S

G

Q

A

N

V

L

T

T

S

E

Q

F

F

D

E

L

N

H

H

A

V

R

R

A

A

I

I

L

A

G

G

L

L

active site: Y144 (≠ S152), G146 (= G154), E247 (= E259), E259 (= E271), N266 (≠ D278), S267 (≠ T279)
binding adenosine-5'-diphosphate: R98 (= R108), K138 (= K147), G143 (≠ S151), Y144 (≠ S152), D145 (≠ S153), G146 (= G154), V178 (≠ I190), E183 (= E195), H206 (= H215), F249 (= F261), E259 (= E271)

Sites not aligning to the query:

active site: 335

4mamA The crystal structure of phosphoribosylaminoimidazole carboxylase atpase subunit of francisella tularensis subsp. Tularensis schu s4 in complex with an adp analog, amp-cp
29% identity, 75% coverage: 6:302/395 of query aligns to 2:290/373 of 4mamA

query
sites
4mamA

R

K

I

I

L

G

L

I

G

G

S

A

G

G

E

Q

L

L

G

A

R

R

E

M

F

L

T

S

I

L

A

A

A

G

K

T

R

P

L

L

G

G

A

L

-

E

-

F

Y

H

V

C

I

L

A

G

C

K

D

N

S

G

Y

D

E

C

K

A

A

E

P

E

A

V

M

V

Q

K

V

T

A

V

D

T

D

D

Y

I

E

E

V

L

L

T

S

K

M

V

L

N

D

D

D

V

E

V

A

A

L

W

A

A

A

K

V

-

I

-

E

-

K

-

H

-

R

Q

P

F

D

D

H

V

I

I

V

T

P

F

E

E

V

N

E

E

A

N

I

I

R

S

T

H

E

E

V

-

L

L

L

I

D

K

F

A

E

I

D

N

K

H

G

E

Y

V

S

S

V

V

V

Y

P

P

S

S

A

A

R

K

A

A

T

-

M

-

L

I

T

A

M

I

N

S

R

Q

D

D

R
|
R

I

L

R

L

D

E

V

K

A

S

-

F

A

M

N

Q

E

D

L

H

G

G

L

I

V

A

T

T

S

A

R

K

F

F

L

V

Y

N

A

I

E

D

T

S

L

L

E

A

E

K

M

L

R

Q

A

S

A

A

V

V

K

D

T

D

V

H

G

G

I

L

P

P

C

A

V
x
I

V

L

K
|
K

P

T

V

R

-

R

M

F

S

G

S
x
Y

S

D

G
|
G

K

K

G

G

Q
|
Q

S

F

I

V

V

I

T

R

A

S

E

Q

E

E

A

D

V

I

D

T

A

K

A

A

W

W

D

D

Y

V

A

L

V

K

E

D

G

A

M

P

R

D

G

G

D

-

R

-

Q

-

R

-

V

L

I

I

V

Y

E
|
E

A

A

F
|
F

I
x
V

A

D

F
|
F

D

D

Y

Y

E
|
E

I

V

T

S

L

Q

L

I

T

C

I

T

R

A

T

D

R

L

Q

K

G

G

V

N

L

I

F

A

C

F

E

Y

P

P

I

L

G

A

-

R

-

N

-

T

H
|
H

R

K

Q

Q

E

-

L

-

G

G

D

I

Y

I

R

V

E

E

S

S

W

-

Q

-

P

E

T

A

P

P

M

F

S

E

K

N

T

V

A

V

L

L

A

A

-

E

A

K

A

A

Q

Q

D

Q

M

I

A

A

R

K

K

I

V

L

V

V

D

K

D

E

L

F

G

A

G

Y

Y

V

G

G

L

T

F

L

G

A

V

I

E
|
E

F

F

F
|
F

V

V

A

K

G

G

E

D

Q

E

V

L

I

I

F

V

S

N

E
|
E

L

I

S

A

P

P

R

R

P

V

H

H

D
x
N

T
x
S

G

G

M

H

V

W

T

S

L

I

I

D

S

G

Q

A

N

V

L

T

T

S

E

Q

F

F

D

E

L

N

H

H

A

V

R

R

A

A

I

I

L

A

G

G

L

L

active site: Y144 (≠ S152), G146 (= G154), E247 (= E259), E259 (= E271), N266 (≠ D278), S267 (≠ T279)
binding phosphomethylphosphonic acid adenosyl ester: R98 (= R108), I136 (≠ V145), K138 (= K147), Y144 (≠ S152), G146 (= G154), Q149 (= Q157), E175 (= E187), F177 (= F189), V178 (≠ I190), F180 (= F192), E183 (= E195), H206 (= H215), F249 (= F261), E259 (= E271)

Sites not aligning to the query:

active site: 335
binding phosphomethylphosphonic acid adenosyl ester: 371

3ax6A Crystal structure of n5-carboxyaminoimidazole ribonucleotide synthetase from thermotoga maritima
26% identity, 93% coverage: 20:385/395 of query aligns to 17:352/360 of 3ax6A

query
sites
3ax6A

T

T

I

L

A

E

A

A

K

K

R

K

L

M

G

G

A

F

Y

Y

V

V

I

I

A

V

C

L

D

D

S

P

Y

T

E

P

K

R

A

S

P

P

A

A

M

G

Q

Q

V

V

A

A

D

D

D

E

Y

Q

E

I

V

V

L

A

S

G

M

F

L

F

D

D

D

S

E

E

A

R

L

I

A

E

A

D

V

L

I

V

E

K

K

G

H

S

R

-

P

-

D

D

H

V

I

T

V

T

P

Y

E

D

V

L

E

E

A

H

I

I

R

D

T

V

E

Q

V

T

L

L

L

K

D

K

F

L

E

Y

D

N

K

E

G

G

Y

Y

S

K

V

I

V

H

P

P

S

S

A

P

R

-

A

Y

T

T

M

L

L

E

T

I

M

I

N

Q

R

D

D
x
K

R

F

I

V

R

Q

D

K

V

E

A

F

A

L

N

K

E

K

L

N

G

G

L

I

V

P

T

V

S

P

R

E

F

Y

L

K

Y

L

A

V

E

K

T

D

L

L

E

E

E

-

M

-

R

-

A

S

A

D

V

V

K

R

T

E

V

F

G

G

I

F

P

P

C

V

V
|
V

V

Q

K
|
K

P

-

V

-

M

-

S

-

S

A

S

R

G

K

K

G

G

G

Q

V

S

F

I

I

V

I

T

K

A

N

E

E

E

K

A

D

V

L

D

E

A

N

A

A

W

-

D

-

Y

-

A

-

V

-

E

-

G

-

M

I

R

K

G

G

D

E

R

-

Q

-

R

-

V

T

I

Y

V

L

E
|
E

A

E

F
|
F

I
x
V

A

E

F

I

D

E

Y

K

E
|
E

I

L

T

A

L

V

L

M

T

V

I

A

R

R

T

N

R

E

Q

K

G

G

V

E

L

I

F

A

C

C

E

Y

P

P

I

V

G

-

H

-

R

-

Q

-

E

-

L

V

G

E

D

M

Y

Y

R

D

E

T

S

V

W

I

Q

A

P

P

T

A

P

R

M

I

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E

K

E

T

K

A

Y

L

S

A

K

A

I

A

A

Q

R

D

E

M

I

A

A

R

T

K

S

V

V

D

E

D

A

L

L

G

E

G

G

Y

V

G

G

L

I

F

F

G

G

V

I

E
|
E

F

M

F
|
F

V

L

A

T

G

K

E

Q

-

G

Q

E

V

I

I

L

F

V

S
x
N

E
|
E

L

I

S

A

P

P

R

R

P

P

H

H

D
x
N

T
x
S

G

G

M

H

V

Y

T

T

L

I

I

E

S

A

Q

C

N

V

L

T

T

S

E

Q

F

F

D

E

L

Q

H

H

A

I

R

R

A

A

I

I

L

M

G

N

L

L

P

P

I

L

P

G

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I

T

H

E

L

L

N

L

G

I

A

P

S

A

A

V

S

M

A

V

V

N

L

L

A

G

D

E

R

E

-

G

H

Y

A

Y

E

G

D

K

F

P

R

A

I

L

E

I

G

G

L

L

A

E

E

E

A

A

L

L

A

A

P

-

A

I

P

E

G

G

V

L

E

-

T

-

D

S

V

L

R

H

L

F

F

Y

S

G

K

K

P

K

V

E

T

T

R

R

P

P

N

Y

R

R

R
x
K

M

M

G

G

V

H

A

F

L

T

A

V

L

V

A

D

R

R

E

-

G

-

T

-

A

-

D

D

D

V

A

E

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R

A

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L

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A

A

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A

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K

active site: E231 (= E259), E244 (= E271), N251 (≠ D278), S252 (≠ T279), K330 (≠ R359)
binding adenosine-5'-diphosphate: K101 (≠ D107), V136 (= V145), K138 (= K147), E164 (= E187), F166 (= F189), V167 (≠ I190), E172 (= E195), F233 (= F261), N243 (≠ S270)

4ma5A The crystal structure of phosphoribosylaminoimidazole carboxylase atpase subunit of francisella tularensis subsp. Tularensis schu s4 in complex with an atp analog, amp-pnp.
28% identity, 75% coverage: 6:302/395 of query aligns to 2:288/363 of 4ma5A

query
sites
4ma5A

R

K

I

I

L

G

L

I

G

G

S

A

G

G

E

Q

L

L

G

A

R

R

E

M

F

L

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S

I

L

A

A

A

G

K

T

R

P

L

L

G

G

A

L

-

E

-

F

Y

H

V

C

I

L

A

G

C

K

D

N

S

G

Y

D

E

C

K

A

A

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P

E

A

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M

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Q

K

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T

A

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D

T

D

D

Y

I

E

E

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L

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K

M

V

L

N

D

D

D

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E

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A

A

L

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A

A

A

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V

-

I

-

E

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K

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H

-

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Q

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D

D

H

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F

E

E

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N

E

E

A

N

I

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S

T

H

E

E

V

-

L

L

L

I

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F

A

E

I

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N

K

H

G

E

Y

V

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S

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V

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Y

P

P

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S

A

A

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K

A

A

T

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M

-

L

I

T

A

M

I

N

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D

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I

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F

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G

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N

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A

A

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C

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x
I

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|
K

P

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V

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M

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x
Y

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x
D

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|
G

K

K

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Q

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A

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|
F

I
x
V

A

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F

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E
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E

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Q

L

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C

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|
H

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E

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L

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L

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E

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F

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-

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x
N

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E

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|
H

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x
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x
S

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G

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A

N

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G

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L

active site: Y144 (≠ S152), G146 (= G154), E247 (= E259), E257 (= E271), N264 (≠ D278), S265 (≠ T279)
binding phosphoaminophosphonic acid-adenylate ester: I136 (≠ V145), K138 (= K147), D145 (≠ S153), G146 (= G154), F177 (= F189), V178 (≠ I190), E183 (= E195), H206 (= H215), E247 (= E259), F249 (= F261), N256 (≠ S270), E257 (= E271), H263 (= H277)

Sites not aligning to the query:

active site: 333

3r5hA Crystal structure of adp-air complex of purk: n5-carboxyaminoimidazole ribonucleotide synthetase (see paper)
26% identity, 91% coverage: 4:361/395 of query aligns to 1:350/383 of 3r5hA

query
sites
3r5hA

V

M

A

T

R

R

I

I

L

I

L

L

L

P

G

G

S

K

G

T

-

I

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G

-

I

-

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x
G

E
x
Q

L
|
L

G

G

R

R

E

M

F

M

T

A

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A

A

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K

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M

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G

A

Y

Y

K

V

I

I

A

A

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Y

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E

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K

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A

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Q

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I

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Y

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D

L

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A

A

L

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V

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I

A

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E

K

I

H

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R

-

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-

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L

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A

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R

-

A

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M

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K

A

N

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I

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E

-

K

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A

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L

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L

A

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L

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E

A

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K

P

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T

M

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-
x
Y

S

D

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K

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x
W

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x
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F

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E

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L

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A

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x
N

-

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I

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A

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A

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L

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A

Q

A

K

A

A

Q

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M

Y

A

A

R

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K

V

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V

A

D

D

D

E

L

L

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E

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Y

V

G

G

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T

F

L

G

A

V

V

E

E

F

M

F
|
F

V

A

A

T

G

A

E

D

-

G

Q

E

V

I

I

Y

F

I

S
x
N

E
|
E

L

L

S

A

P

P

R
|
R

P

P

H

H

D

N

T

S

G

G

M

H

V

Y

T

T

L

Q

I

D

S

A

Q

C

N

E

L

T

T

S

E

Q

F

F

D

G

L

Q

H

H

A

I

R

R

A

A

I

I

L

C

G

N

L

L

P

P

I

L

P

G

H

E

I

T

H

N

L

L

N

L

G

K

A

P

S

V

A

V

S

M

A

V

V

N

L

I

L

L

A

G

D

E

R

-

H

-

A

-

E

-

D

-

F

-

R

H

I

I

E

E

G

G

L

V

A

L

E

R

A

Q

L

V

A

N

P

R

A

L

P

T

G

G

V

C

E

Y

T

-

D

-

V

L

R

H

L

L

F

Y

S

G

K
|
K

P

E

V

E

T

A

R

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P

A

N

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R
|
R

R

K

M

M

G

G

binding adenosine-5'-diphosphate: R107 (= R108), K147 (= K147), Q158 (= Q157), W184 (≠ F189), V185 (≠ I190), F187 (= F192), E190 (= E195), N216 (≠ D221), F257 (= F261), N267 (≠ S270), E268 (= E271)
binding 5-aminoimidazole ribonucleotide: G17 (vs. gap), Q18 (≠ E14), L19 (= L15), E76 (= E74), Y153 (vs. gap), R272 (= R275), K340 (= K351), R347 (= R358)

3q2oB Crystal structure of purk: n5-carboxyaminoimidazole ribonucleotide synthetase (see paper)
26% identity, 91% coverage: 4:361/395 of query aligns to 1:350/377 of 3q2oB

query
sites
3q2oB

V

M

A

T

R

R

I

I

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I

L

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L

P

G

G

S

K

G

T

-

I

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G

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I

-

G

E

Q

L

L

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G

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M

F

M

T

A

I

L

A

A

K

K

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G

A

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K

V

I

I

A

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E

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K

N

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S

P

P

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M

A

Q

Q

V

V

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D

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E

I

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M

Y

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D

D

D

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A

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I

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A

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V

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I

A

E

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H

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R

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S

D

D

H

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I

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P

Y

E

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E

E

A

N

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Y

E

R

V

C

L

L

L

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D

W

F

L

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D

K

K

H

G

A

Y

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S

-

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-

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L

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P

S

Q

A

G

R

-

A

S

T

Q

M

L

L

L

T

S

M

K

N
x
T

R

Q

D

N

R

R

I

F

R

T

D
x
E

V

K

A

N

A

A

N

I

E

E

-

K

L

A

G

G

L

L

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S

A

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Y

L

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Y

L

A

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Q

T

N

L

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A

E

A

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A

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V

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M

T

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G

-

Y

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D

G

G

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K

G

G

Q

Q

S

V

I

V

V

L

T

R

A

S

E

E

E

A

A

D

V

V

D

D

A

E

A

A

W

R

D

K

Y

L

A

A

V

-

E

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M

-

R

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G

-

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N

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E

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E

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L

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S

G

G

V

E

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T

F

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C

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E

F

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P

I

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G

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H

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R

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Q

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E

H

L

V

G

N

D

N

-

I

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H

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E

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I

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A

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E

T

E

A

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L

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A

Q

A

K

A

A

Q

I

D

A

M

Y

A

A

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K

K

V

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L

V

A

D

D

D

E

L

L

G

E

G

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V

G

G

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F

L

G

A

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M

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G

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L
|
L

S

A

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P

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R

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H

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H

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L

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H

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A

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N

L

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I

T

H

N

L

L

N

L

G

K

A

P

S

V

A

V

S

M

A

V

V

N

L

I

L

L

A

G

D

E

R

-

H

-

A

-

E

-

D

-

F

-

R

H

I

I

E

E

G

G

L

V

A

L

E

R

A

Q

L

V

A

N

P

R

A

L

P

T

G

G

V

C

E

Y

T

-

D

-

V

L

R

H

L

L

F

Y

S

G

K

K

P

E

V

E

T

A

R

K

P

A

N

Q

R

R

R

K

M

M

G

G

binding magnesium ion: T104 (≠ N105), E110 (≠ D111), L269 (= L272)

4dlkA Crystal structure of atp-ca++ complex of purk: n5- carboxyaminoimidazole ribonucleotide synthetase (see paper)
26% identity, 91% coverage: 4:361/395 of query aligns to 1:350/380 of 4dlkA

query
sites
4dlkA

V

M

A

T

R

R

I

I

L

I

L

L

L

P

G

G

S

K

G

T

-

I

-

G

-

I

-

G

E

Q

L

L

G

G

R

R

E

M

F

M

T

A

I

L

A

A

K

K

R

E

L

M

G

G

A

Y

Y

K

V

I

I

A

A

V

C

L

D

D

S

P

Y

T

E

K

K

N

A

S

P

P

A

C

M

A

Q
|
Q

V

V

A
|
A

D

D

D

I

Y

E

E

I

V

V

L

A

S

S

M

Y

L

D

D

D

D

L

E

K

A

A

L

I

A

Q

A

H

V

L

I

A

E

E

K

I

H

-

R

-

P

S

D

D

H

V

I

V

V

T

P

Y

E
|
E

V
x
F

E

E

A

N

I

I

R

D

T

Y

E

R

V

C

L

L

L

Q

D

W

F

L

E

E

D

K

K

H

G

A

Y

Y

S

-

V

-

V

L

P

P

S

Q

A

G

R

-

A

S

T

Q

M

L

L

L

T

S

M

K

N

T

R

Q

D

N

R
|
R

I

F

R

T

D

E

V

K

A

N

A

A

N

I

E

E

-

K

L

A

G

G

L

L

V

P

T

V

S

A

R

T

F

Y

L

R

Y

L

A

V

E

Q

T

N

L

Q

E

E

E

Q

M

L

R

T

A

E

A

A

V

I

K

A

T

E

V

L

G

S

I

Y

P

P

C

S

V

V

V

L

K
|
K

P

T

V

T

M

T

S

G

-
x
Y

S
x
D

G
|
G

K

K

G

G

Q
|
Q

S

V

I

V

V

L

T

R

A

S

E

E

E

A

A

D

V

V

D

D

A

E

A

A

W

R

D

K

Y

L

A

A

V

-

E

-

G

-

M

-

R

-

G

-

D

N

R

A

Q

A

R

E

V

C

I

I

V

L

E

E

A

K

F
x
W

I
x
V

A

P

F
|
F

D

E

Y

K

E
|
E

I

V

T

S

L

V

L

I

T

V

I

I

R

R

T

S

R

V

Q

S

G

G

V

E

L

T

F

K

C

V

E

F

P

P

I

V

G

A

H

E

R

N

Q

I

E

H

L

V

G

N

D

N

-

I

Y

L

R

H

E

E

S

S

W

I

Q

V

P

P

T

A

P

R

M

I

S

T

K

E

T

E

A

L

L

S

A

Q

A

K

A

A

Q

I

D

A

M

Y

A

A

R

K

K

V

V

L

V

A

D

D

D

E

L

L

G

E

G

L

Y

V

G

G

L

T

F

L

G

A

V

V

E
|
E

F

M

F
|
F

V

A

A

T

G

A

E

D

-

G

Q

E

V

I

I

Y

F

I

S
x
N

E
|
E

L

L

S

A

P

P

R
|
R

P

P

H
|
H

D
x
N

T
x
S

G

G

M

H

V

Y

T

T

L

Q

I

D

S

A

Q

C

N

E

L

T

T

S

E

Q

F

F

D

G

L

Q

H

H

A

I

R

R

A

A

I

I

L

C

G

N

L

L

P

P

I

L

P

G

H

E

I

T

H

N

L

L

N

L

G

K

A

P

S

V

A

V

S

M

A

V

V

N

L

I

L

L

A

G

D

E

R

-

H

-

A

-

E

-

D

-

F

-

R

H

I

I

E

E

G

G

L

V

A

L

E

R

A

Q

L

V

A

N

P

R

A

L

P

T

G

G

V

C

E

Y

T

-

D

-

V

L

R

H

L

L

F

Y

S

G

K
|
K

P

E

V

E

T

A

R

K

P

A

N

Q

R
|
R

R
x
K

M

M

G

G

active site: Y153 (vs. gap), G155 (= G154), E255 (= E259), E268 (= E271), N275 (≠ D278), S276 (≠ T279), K348 (≠ R359)
binding adenosine-5'-triphosphate: E76 (= E74), F77 (≠ V75), R107 (= R108), K147 (= K147), Y153 (vs. gap), D154 (≠ S153), G155 (= G154), Q158 (= Q157), W184 (≠ F189), V185 (≠ I190), F187 (= F192), E190 (= E195), E255 (= E259), F257 (= F261), N267 (≠ S270), E268 (= E271), R272 (= R275), H274 (= H277), N275 (≠ D278), K340 (= K351), R347 (= R358), K348 (≠ R359)
binding calcium ion: E255 (= E259), E268 (= E271)
binding phosphate ion: Q47 (= Q43), A49 (= A45)

3v4sB Crystal structure of adp-atp complex of purk: n5-carboxyaminoimidazole ribonucleotide synthetase (see paper)
26% identity, 91% coverage: 4:361/395 of query aligns to 2:351/381 of 3v4sB

query
sites
3v4sB

V

M

A

T

R

R

I

I

L

I

L

L

L

P

G

G

S

K

G

T

-

I

-

G

-

I

-

G

E

Q

L

L

G

G

R

R

E

M

F

M

T

A

I

L

A

A

K

K

R

E

L

M

G

G

A

Y

Y

K

V

I

I

A

A

V

C

L

D

D

S

P

Y

T

E

K

K

N

A

S

P

P

A

C

M

A

Q

Q

V

V

A

A

D

D

D

I

Y

E

E

I

V

V

L

A

S

S

M

Y

L

D

D

D

D

L

E

K

A

A

L

I

A

Q

A

H

V

L

I

A

E

E

K

I

H

-

R

-

P

S

D

D

H

V

I

V

V

T

P

Y

E

E

V

F

E

E

A

N

I

I

R

D

T

Y

E

R

V

C

L

L

L

Q

D

W

F

L

E

E

D

K

K

H

G

A

Y

Y

S

-

V

-

V

L

P

P

S

Q

A

G

R

-

A

S

T

Q

M

L

L

L

T

S

M

K

N
x
T

R

Q

D

N

R
|
R

I

F

R

T

D
x
E

V

K

A

N

A

A

N

I

E

E

-

K

L

A

G

G

L

L

V

P

T

V

S

A

R

T

F

Y

L

R

Y

L

A

V

E

Q

T

N

L

Q

E

E

E

Q

M

L

R

T

A

E

A

A

V

I

K

A

T

E

V

L

G

S

I

Y

P

P

C

S

V

V

V

L

K
|
K

P

T

V

T

M

T

S

G

-
x
Y

S
x
D

G
|
G

K

K

G

G

Q
|
Q

S

V

I

V

V

L

T

R

A

S

E

E

E

A

A

D

V

V

D

D

A

E

A

A

W

R

D

K

Y

L

A

A

V

-

E

-

G

-

M

-

R

-

G

-

D

N

R

A

Q

A

R

E

V

C

I

I

V

L

E
|
E

A

K

F
x
W

I
x
V

A

P

F
|
F

D

E

Y

K

E
|
E

I

V

T

S

L

V

L

I

T

V

I

I

R

R

T

S

R

V

Q

S

G

G

V

E

L

T

F

K

C

V

E

F

P

P

I

V

G

A

H

E

R

N

Q

I

E
x
H

L

V

G

N

D
x
N

-

I

Y

L

R

H

E

E

S

S

W

I

Q

V

P

P

T

A

P

R

M

I

S

T

K

E

T

E

A

L

L

S

A

Q

A

K

A

A

Q

I

D

A

M

Y

A

A

R

K

K

V

V

L

V

A

D

D

D

E

L

L

G

E

G

L

Y

V

G

G

L

T

F

L

G

A

V

V

E
|
E

F

M

F
|
F

V

A

A

T

G

A

E

D

-

G

Q

E

V

I

I

Y

F

I

S

N

E
|
E

L
|
L

S

A

P

P

R
|
R

P

P

H
|
H

D
x
N

T

S

G

G

M

H

V

Y

T

T

L

Q

I

D

S

A

Q

C

N

E

L

T

T

S

E

Q

F

F

D

G

L

Q

H

H

A

I

R

R

A

A

I

I

L

C

G

N

L

L

P

P

I

L

P

G

H

E

I

T

H

N

L

L

N

L

G

K

A

P

S

V

A

V

S

M

A

V

V

N

L

I

L

L

A

G

D

E

R

-

H

-

A

-

E

-

D

-

F

-

R

H

I

I

E

E

G

G

L

V

A

L

E

R

A

Q

L

V

A

N

P

R

A

L

P

T

G

G

V

C

E

Y

T

-

D

-

V

L

R

H

L

L

F

Y

S

G

K

K

P

E

V

E

T

A

R

K

P

A

N

Q

R

R

R

K

M

M

G

G

binding adenosine-5'-triphosphate: R108 (= R108), K148 (= K147), Y154 (vs. gap), D155 (≠ S153), G156 (= G154), Q159 (= Q157), E183 (= E187), W185 (≠ F189), V186 (≠ I190), F188 (= F192), E191 (= E195), H214 (≠ E218), N217 (≠ D221), E256 (= E259), F258 (= F261), E269 (= E271)
binding carbonate ion: R273 (= R275), H275 (= H277), N276 (≠ D278)
binding magnesium ion: T105 (≠ N105), E111 (≠ D111), E256 (= E259), E269 (= E271), L270 (= L272)

3v4sA Crystal structure of adp-atp complex of purk: n5-carboxyaminoimidazole ribonucleotide synthetase (see paper)
26% identity, 88% coverage: 14:361/395 of query aligns to 17:349/380 of 3v4sA

query
sites
3v4sA

E

Q

L

L

G

G

R

R

E

M

F

M

T

A

I

L

A

A

K

K

R

E

L

M

G

G

A

Y

Y

K

V

I

I

A

A

V

C

L

D

D

S

P

Y

T

E

K

K

N

A

S

P

P

A

C

M

A

Q

Q

V

V

A

A

D

D

D

I

Y

E

E

I

V

V

L

A

S

S

M

Y

L

D

D

D

D

L

E

K

A

A

L

I

A

Q

A

H

V

L

I

A

E

E

K

I

H

-

R

-

P

S

D

D

H

V

I

V

V

T

P

Y

E

E

V

F

E

E

A

N

I

I

R

D

T

Y

E

R

V

C

L

L

L

Q

D

W

F

L

E

E

D

K

K

H

G

A

Y

Y

S

-

V

-

V

L

P

P

S

Q

A

G

R

-

A

S

T

Q

M

L

L

L

T

S

M

K

N

T

R

Q

D

N

R
|
R

I

F

R

T

D

E

V

K

A

N

A

A

N

I

E

E

-

K

L

A

G

G

L

L

V

P

T

V

S

A

R

T

F

Y

L

R

Y

L

A

V

E

Q

T

N

L

Q

E

E

E

Q

M

L

R

T

A

E

A

A

V

I

K

A

T

E

V

L

G

S

I

Y

P

P

C

S

V

V

V

L

K
|
K

P

T

V

T

M

T

S

G

-
x
Y

S

D

G
|
G

K

K

G

G

Q
|
Q

S

V

I

V

V

L

T

R

A

S

E

E

E

A

A

D

V

V

D

D

A

E

A

A

W

R

D

K

Y

L

A

A

V

-

E

-

G

-

M

-

R

-

G

-

D

N

R

A

Q

A

R

E

V

C

I

I

V

L

E

E

A

K

F
x
W

I
x
V

A

P

F

F

D

E

Y

K

E
|
E

I

V

T

S

L

V

L

I

T

V

I

I

R

R

T

S

R

V

Q

S

G

G

V

E

L

T

F

K

C

V

E

F

P

P

I

V

G

A

H

E

R

N

Q

I

E

H

L

V

G

N

D
x
N

-

I

Y

L

R

H

E

E

S

S

W

I

Q

V

P

P

T

A

P

R

M

I

S

T

K

E

T

E

A

L

L

S

A

Q

A

K

A

A

Q

I

D

A

M

Y

A

A

R

K

K

V

V

L

V

A

D

D

D

E

L

L

G

E

G

L

Y

V

G

G

L

T

F

L

G

A

V

V

E

E

F

M

F
|
F

V

A

A

T

G

A

E

D

-

G

Q

E

V

I

I

Y

F

I

S
x
N

E
|
E

L

L

S

A

P

P

R
|
R

P

P

H
|
H

D
x
N

T

S

G

G

M

H

V

Y

T

T

L

Q

I

D

S

A

Q

C

N

E

L

T

T

S

E

Q

F

F

D

G

L

Q

H

H

A

I

R

R

A

A

I

I

L

C

G

N

L

L

P

P

I

L

P

G

H

E

I

T

H

N

L

L

N

L

G

K

A

P

S

V

A

V

S

M

A

V

V

N

L

I

L

L

A

G

D

E

R

-

H

-

A

-

E

-

D

-

F

-

R

H

I

I

E

E

G

G

L

V

A

L

E

R

A

Q

L

V

A

N

P

R

A

L

P

T

G

G

V

C

E

Y

T

-

D

-

V

L

R

H

L

L

F

Y

S

G

K

K

P

E

V

E

T

A

R

K

P

A

N

Q

R

R

R

K

M

M

G

G

binding adenosine-5'-diphosphate: R106 (= R108), K146 (= K147), Y152 (vs. gap), G154 (= G154), Q157 (= Q157), W183 (≠ F189), V184 (≠ I190), E189 (= E195), N215 (≠ D221), F256 (= F261), N266 (≠ S270), E267 (= E271)
binding carbonate ion: R271 (= R275), H273 (= H277), N274 (≠ D278)

Query Sequence

>WP_079648198.1 NCBI__GCF_900167915.1:WP_079648198.1
MRPVARILLLGSGELGREFTIAAKRLGAYVIACDSYEKAPAMQVADDYEVLSMLDDEALA
AVIEKHRPDHIVPEVEAIRTEVLLDFEDKGYSVVPSARATMLTMNRDRIRDVAANELGLV
TSRFLYAETLEEMRAAVKTVGIPCVVKPVMSSSGKGQSIVTAEEAVDAAWDYAVEGMRGD
RQRVIVEAFIAFDYEITLLTIRTRQGVLFCEPIGHRQELGDYRESWQPTPMSKTALAAAQ
DMARKVVDDLGGYGLFGVEFFVAGEQVIFSELSPRPHDTGMVTLISQNLTEFDLHARAIL
GLPIPHIHLNGASASAVLLADRHAEDFRIEGLAEALAPAPGVETDVRLFSKPVTRPNRRM
GVALALAREGTADDARAAARAAVAKLSIVYAGEVQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory