SitesBLAST
Comparing WP_079649976.1 NCBI__GCF_900167915.1:WP_079649976.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
8gy3C Cryo-em structure of membrane-bound aldehyde dehydrogenase from gluconobacter oxydans
30% identity, 94% coverage: 41:739/740 of query aligns to 12:724/732 of 8gy3C
- binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): M38 (≠ I67), G39 (= G68), Q40 (= Q69), H41 (≠ G70), V42 (≠ I71), A45 (≠ M74), G79 (= G108), G80 (= G109), S81 (= S110), S83 (≠ A112), V84 (≠ T113), G374 (= G403), F375 (= F404), L379 (= L408), L499 (= L511), R500 (= R512), V624 (≠ I639), D625 (≠ N640), Q632 (= Q647), T687 (= T702), G688 (= G703), L689 (= L704), G690 (= G705), E691 (= E706)
5y6qC Crystal structure of an aldehyde oxidase from methylobacillus sp. Ky4400 (see paper)
24% identity, 53% coverage: 206:595/740 of query aligns to 20:416/748 of 5y6qC
Sites not aligning to the query:
- active site: 715, 716
- binding pterin cytosine dinucleotide: 461, 462, 463, 464, 468, 500, 502, 503, 504, 505, 638, 640, 641, 648, 711, 713, 714, 715
5g5gC Escherichia coli periplasmic aldehyde oxidase (see paper)
24% identity, 61% coverage: 191:639/740 of query aligns to 16:475/731 of 5g5gC
- active site: Q211 (= Q373), L246 (= L408), P316 (≠ A477), Q322 (≠ S483), R350 (= R512)
- binding pterin cytosine dinucleotide: G240 (= G402), G241 (= G403), F242 (= F404), R350 (= R512), I468 (≠ A632), G469 (≠ D633), T470 (≠ V634)
Sites not aligning to the query:
- active site: 692, 693
- binding pterin cytosine dinucleotide: 507, 509, 511, 512, 617, 618, 621, 625, 688, 690, 691, 692
P77489 Aldehyde oxidoreductase molybdenum-binding subunit PaoC; EC 1.2.99.6 from Escherichia coli (strain K12) (see 2 papers)
24% identity, 61% coverage: 191:639/740 of query aligns to 16:475/732 of P77489
- GF 241:242 (= GF 403:404) binding Mo-molybdopterin cytosine dinucleotide
- R440 (≠ S604) mutation R->H,K: Decrease in catalytic efficiency.
- IGT 468:470 (≠ ADV 632:634) binding Mo-molybdopterin cytosine dinucleotide
Sites not aligning to the query:
- 511:512 binding Mo-molybdopterin cytosine dinucleotide
- 615:621 binding Mo-molybdopterin cytosine dinucleotide
- 625 binding Mo-molybdopterin cytosine dinucleotide
- 688:691 binding Mo-molybdopterin cytosine dinucleotide
- 692 E→Q: Loss of activity.
Q8GUQ8 Xanthine dehydrogenase 1; AtXDH1; EC 1.17.1.4 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
22% identity, 63% coverage: 170:637/740 of query aligns to 572:1072/1361 of Q8GUQ8
- E831 (≠ M413) mutation to A: Loss of activity.
- R909 (≠ A489) mutation to A: Decreases activity 12-fold.
Sites not aligning to the query:
- 364 W→A: Decreases activity 8-fold.
- 421 Y→A: Decreases activity 4-fold.
- 1297 E→A: Decreases activity 40-fold.
2e1qA Crystal structure of human xanthine oxidoreductase mutant, glu803val (see paper)
25% identity, 40% coverage: 187:479/740 of query aligns to 577:851/1307 of 2e1qA
- active site: Q742 (= Q373), V777 (≠ L408)
- binding bicarbonate ion: R814 (= R443), H815 (≠ P444)
- binding calcium ion: E715 (≠ G348), H716 (= H349), Y718 (≠ T351), T741 (= T372), T747 (≠ G378), S780 (≠ D411), T781 (≠ P412), S784 (≠ E415), T811 (≠ D440), G812 (≠ F441)
- binding fe2/s2 (inorganic) cluster: L719 (= L352)
- binding hydroxy(dioxo)molybdenum: F773 (= F404), G774 (= G405)
Sites not aligning to the query:
- active site: 855, 859, 887, 1235, 1236
- binding bicarbonate ion: 852, 886, 889, 890, 893
- binding flavin-adenine dinucleotide: 43, 44, 230, 231, 232, 233, 234, 235, 236, 237, 238, 311, 312, 316, 320, 321, 324, 325, 327, 328, 333, 334, 377, 378
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 71, 110, 111, 112, 114, 146, 148
- binding hydroxy(dioxo)molybdenum: 887, 1053, 1054, 1236
2e3tA Crystal structure of rat xanthine oxidoreductase mutant (w335a and f336l) (see paper)
26% identity, 28% coverage: 272:479/740 of query aligns to 642:849/1291 of 2e3tA
- active site: Q740 (= Q373), E775 (≠ L408)
- binding bicarbonate ion: R812 (= R443), H813 (≠ P444)
- binding calcium ion: E713 (≠ G348), H714 (= H349), Y716 (≠ T351), T809 (≠ D440), G810 (≠ F441), G840 (≠ F470), T843 (≠ D473), E844 (≠ G474), S847 (≠ A477)
- binding fe2/s2 (inorganic) cluster: L717 (= L352)
- binding uric acid: E775 (≠ L408)
Sites not aligning to the query:
- active site: 853, 857, 885, 1233, 1234
- binding bicarbonate ion: 850, 882, 883, 887, 888, 891
- binding calcium ion: 880, 881
- binding flavin-adenine dinucleotide: 44, 228, 229, 230, 231, 232, 233, 234, 235, 236, 309, 318, 319, 322, 323, 325, 326, 331, 332, 375, 376
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 69, 71, 109, 110, 113, 145, 147
- binding uric acid: 853, 887, 982, 983, 1051, 1052, 1234
6a7xB Rat xanthine oxidoreductase, d428a variant, NAD bound form
26% identity, 28% coverage: 272:479/740 of query aligns to 640:847/1291 of 6a7xB
Sites not aligning to the query:
- active site: 851, 855, 883, 1231, 1232
- binding bicarbonate ion: 880, 881, 885, 886, 889
- binding flavin-adenine dinucleotide: 44, 227, 228, 229, 230, 231, 232, 233, 234, 307, 312, 317, 320, 321, 323, 324, 330, 373, 374
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 69, 71, 109, 110, 111, 113, 145, 147
- binding nicotinamide-adenine-dinucleotide: 327, 363, 364, 428, 430, 431, 471, 478
- binding uric acid: 851, 885, 980, 981, 1049, 1050, 1232
4yswA Structure of rat xanthine oxidoreductase, c-terminal deletion protein variant, nadh bound form (see paper)
26% identity, 28% coverage: 272:479/740 of query aligns to 640:847/1286 of 4yswA
Sites not aligning to the query:
- active site: 851, 855, 883, 1231, 1232
- binding bicarbonate ion: 848, 880, 881, 882, 885, 886, 889
- binding calcium ion: 878, 879
- binding flavin-adenine dinucleotide: 44, 226, 227, 228, 229, 230, 231, 232, 233, 234, 307, 308, 312, 316, 317, 320, 321, 323, 324, 329, 330, 373, 374, 399
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 71, 110, 111, 113, 145, 147
- binding 1,4-dihydronicotinamide adenine dinucleotide: 233, 326, 327, 328, 363, 364, 400, 401, 428, 430, 431, 471, 478, 1196
- binding uric acid: 851, 885, 980, 981, 1050, 1232
P22985 Xanthine dehydrogenase/oxidase; EC 1.17.1.4; EC 1.17.3.2 from Rattus norvegicus (Rat) (see 2 papers)
26% identity, 28% coverage: 272:479/740 of query aligns to 669:876/1331 of P22985
Sites not aligning to the query:
- 43 binding [2Fe-2S] cluster
- 48 binding [2Fe-2S] cluster
- 51 binding [2Fe-2S] cluster
- 73 binding [2Fe-2S] cluster
- 112 binding [2Fe-2S] cluster
- 115 binding [2Fe-2S] cluster
- 147 binding [2Fe-2S] cluster
- 149 binding [2Fe-2S] cluster
- 256:263 binding FAD
- 335:336 WF→AL: Converts the enzyme to the oxidase form that utilizes molecular oxygen as electron acceptor. Interferes with normal conversion to the dehydrogenase form by reducing agents.
- 346:350 binding FAD
- 359 binding FAD
- 403 binding FAD
- 535 C→A: Slows the conversion from the dehydrogenase form to the oxidase form; when associated with R-992. Abolishes conversion from the dehydrogenase form to the oxidase form; when associated with R-992 and S-1316.
- 992 C→R: Slows the conversion from the dehydrogenase form to the oxidase form; when associated with A-535. Abolishes conversion from the dehydrogenase form to the oxidase form; when associated with A-535 and S-1316.
- 1316 C→S: Abolishes conversion from the dehydrogenase form to the oxidase form; when associated with A-535 and R-992.
6a7xA Rat xanthine oxidoreductase, d428a variant, NAD bound form
26% identity, 28% coverage: 272:479/740 of query aligns to 642:849/1295 of 6a7xA
Sites not aligning to the query:
- active site: 853, 857, 885, 1233, 1234
- binding bicarbonate ion: 850, 883, 884, 887, 888, 891
- binding flavin-adenine dinucleotide: 44, 228, 229, 230, 231, 232, 233, 234, 235, 236, 309, 314, 319, 322, 323, 325, 326, 332, 376
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 69, 71, 109, 110, 111, 113, 145, 147
- binding nicotinamide-adenine-dinucleotide: 329, 365, 366, 432, 433, 473, 480
- binding uric acid: 853, 887, 982, 983, 1052, 1234
2ckjA Human milk xanthine oxidoreductase
25% identity, 40% coverage: 187:479/740 of query aligns to 546:820/1264 of 2ckjA
Sites not aligning to the query:
- active site: 824, 828, 856, 1204, 1205
- binding flavin-adenine dinucleotide: 228, 230, 231, 232, 233, 234, 308, 309, 317, 318, 321, 322, 324, 325, 331, 375
- binding fe2/s2 (inorganic) cluster: 40, 41, 42, 44, 46, 47, 49, 71, 111, 112, 114, 146, 147, 148
3b9jC Structure of xanthine oxidase with 2-hydroxy-6-methylpurine (see paper)
23% identity, 48% coverage: 245:599/740 of query aligns to 73:430/758 of 3b9jC
Sites not aligning to the query:
3nvzC Crystal structure of bovine xanthine oxidase in complex with indole-3- aldehyde (see paper)
23% identity, 48% coverage: 245:599/740 of query aligns to 73:430/755 of 3nvzC
Sites not aligning to the query:
3nvvC Crystal structure of bovine xanthine oxidase in complex with arsenite (see paper)
23% identity, 48% coverage: 245:599/740 of query aligns to 73:430/755 of 3nvvC
Sites not aligning to the query:
3ns1C Crystal structure of bovine xanthine oxidase in complex with 6- mercaptopurine (see paper)
23% identity, 48% coverage: 245:599/740 of query aligns to 73:430/755 of 3ns1C
Sites not aligning to the query:
3etrC Crystal structure of xanthine oxidase in complex with lumazine (see paper)
23% identity, 48% coverage: 245:599/740 of query aligns to 73:430/755 of 3etrC
Sites not aligning to the query:
3nvyC Crystal structure of bovine xanthine oxidase in complex with quercetin (see paper)
23% identity, 48% coverage: 245:599/740 of query aligns to 73:430/756 of 3nvyC
- active site: Q197 (= Q373), E232 (≠ L408), R310 (≠ A489), H314 (vs. gap), R342 (= R512)
- binding 3,5,7,3',4'-pentahydroxyflavone: L78 (≠ V250), E232 (≠ L408), L303 (= L482), R310 (≠ A489), F344 (≠ P514)
Sites not aligning to the query:
3nvwC Crystal structure of bovine xanthine oxidase in complex with guanine (see paper)
23% identity, 48% coverage: 245:599/740 of query aligns to 73:430/756 of 3nvwC
Sites not aligning to the query:
3eub4 Crystal structure of desulfo-xanthine oxidase with xanthine (see paper)
23% identity, 48% coverage: 245:599/740 of query aligns to 73:430/756 of 3eub4
Sites not aligning to the query:
Query Sequence
>WP_079649976.1 NCBI__GCF_900167915.1:WP_079649976.1
MIDMLEQADRRAFLKIGAAVGGGLMLGLMRPSVAVAGATAETAAELNGYVRIAPDGIATI
MAKNPEIGQGIKTMLPMLIAEELDIAWKDVRIEQADADARRFGQQIAGGSYATPLHWDPL
RRVGAAARQMLIAAAAQRWQCHPAECATEPGMVVHAASGRKLGYGALAGIAATMPVPDLN
NVPLKPEAGYRIIGKPTPQVDIDAIVTGKMQFGIDVEVPGMAYAVFAKCPVPGGKPVRAN
LDEISREKGVIATFVVDGSTDAPAGGLVSGVAIVADSWWRAEKARDKLRVEWDGGAIAAH
SSAHFAAEAARLFGQPATAVIRKDGEVAKALAGAARTVEADYFYPFIGHATLEPQNCTAS
VIGDKVEIWAPTQAPARGIALIAETLGIPEANVTVHLIRCGGGFGRRLIADPMVEAAYIA
KKASRPVKLLWSRKDDMQHDFYRPAGFHRLKGGLDASGRLVALHDHFVTFGKDGKVARSA
DLSASEFPAQLVPHCLYESSLIECGIPTGPLRAPGSNAIAFVFQSFMDELAHAAGKDPYQ
FQLDMLSEPRLLPTGRSLRPGSAEKVSFDTRRMADVLRKAASMSGWGKRRLPKRTGMGIA
CYFSHLGYFAEVALVAVSKDGTPSVEQVWVAADVGRHIINPSMAVNQVQGSVIDGIGSAL
FQQITIEKGGVVQANFNDHDLIRIDRAPIVEVEFLKTDFPPTGLGEPALPPAIPAICNAI
HAATGKRIRSLPIDIALLRA
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory