Comparing WP_080517386.1 NCBI__GCF_000015985.1:WP_080517386.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6g4fA Crystal structure of the omega transaminase from pseudomonas jessenii in complex with pmp (see paper)
61% identity, 97% coverage: 7:454/461 of query aligns to 1:448/451 of 6g4fA
6g4eA Crystal structure of the omega transaminase from pseudomonas jessenii in complex with plp and 6-aminohexanoate (6-aca) (see paper)
61% identity, 97% coverage: 7:454/461 of query aligns to 1:448/451 of 6g4eA
6g4dB Crystal structure of the omega transaminase from pseudomonas jessenii in complex with plp (see paper)
61% identity, 97% coverage: 7:454/461 of query aligns to 1:448/453 of 6g4dB
5ghgB Transaminase w58l with smba
56% identity, 98% coverage: 7:457/461 of query aligns to 2:429/433 of 5ghgB
5kr6B Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
49% identity, 97% coverage: 6:452/461 of query aligns to 6:457/460 of 5kr6B
Q94CE5 Gamma-aminobutyrate transaminase POP2, mitochondrial; AtGABA-T; Gamma-aminobutyric acid aminotransferase 1; Protein HEXENAL RESPONSE 1; Protein POLLEN-PISTIL INCOMPATIBILITY 2; AtPOP2; EC 2.6.1.96 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
46% identity, 94% coverage: 18:451/461 of query aligns to 56:491/504 of Q94CE5
D6R3B6 Vanillin aminotransferase; Putative aminotransferase; pAMT; EC 2.6.1.119 from Capsicum frutescens (Cayenne pepper) (Tabasco pepper) (see paper)
44% identity, 98% coverage: 2:451/461 of query aligns to 1:447/459 of D6R3B6
5kr5A Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
47% identity, 97% coverage: 7:452/461 of query aligns to 3:453/455 of 5kr5A
4grxC Structure of an omega-aminotransferase from paracoccus denitrificans (see paper)
45% identity, 95% coverage: 16:451/461 of query aligns to 10:444/449 of 4grxC
4e3qA Pmp-bound form of aminotransferase crystal structure from vibrio fluvialis (see paper)
45% identity, 94% coverage: 16:450/461 of query aligns to 13:446/452 of 4e3qA
5kr3A Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
45% identity, 98% coverage: 2:452/461 of query aligns to 2:454/458 of 5kr3A
5kquC Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
45% identity, 97% coverage: 7:452/461 of query aligns to 5:455/459 of 5kquC
3gjuA Crystal structure of a putative aminotransferase (mll7127) from mesorhizobium loti maff303099 at 1.55 a resolution
44% identity, 95% coverage: 1:437/461 of query aligns to 2:444/458 of 3gjuA
6io1B Crystal structure of a novel thermostable (s)-enantioselective omega- transaminase from thermomicrobium roseum (see paper)
44% identity, 96% coverage: 9:449/461 of query aligns to 8:444/448 of 6io1B
7ypmA Crystal structure of transaminase cc1012 complexed with plp and l- alanine (see paper)
44% identity, 96% coverage: 9:449/461 of query aligns to 6:445/454 of 7ypmA
3fcrA Crystal structure of putative aminotransferase (yp_614685.1) from silicibacter sp. Tm1040 at 1.80 a resolution
39% identity, 96% coverage: 6:448/461 of query aligns to 5:453/458 of 3fcrA
7ypnD Crystal structure of transaminase cc1012 mutant m9 complexed with plp (see paper)
44% identity, 96% coverage: 9:449/461 of query aligns to 6:445/455 of 7ypnD
7qx0B Transaminase structure of plurienzyme (tr2e2) in complex with plp (see paper)
40% identity, 95% coverage: 13:451/461 of query aligns to 9:438/443 of 7qx0B
7qx3A Structure of the transaminase tr2e2 with eos (see paper)
41% identity, 91% coverage: 34:451/461 of query aligns to 3:417/422 of 7qx3A
6gwiB The crystal structure of halomonas elongata amino-transferase (see paper)
41% identity, 97% coverage: 6:452/461 of query aligns to 3:446/450 of 6gwiB
>WP_080517386.1 NCBI__GCF_000015985.1:WP_080517386.1
MMNSLSNSLAAADIAHSLHPYTNARAHERNGPLIITRGQGVHVYDSEGREYIEGLAGLWS
VAVGFSEPRLAEAAARQMAELPYYHTFAGKAHEPQIRLAEKLVEMTPVALTRVFFTNSGS
EANDTVVKLVWFMNNALGRPQKKKFLSRIKGYHGITIASGSLTGLPVNHKGFDLPAIPVV
HLGCPHHWRFGAEGESEADFCARLLREAEETILAEGPETVAAFIGEPVMGAGGVIVPPDG
YWSGIEALCRKYDILLVSDEVINGFGRTGARWGCEKFGFTPDILVTSKQLTSSYMPLAAV
LMTDKVYQIIADHTETVGTLGHGFTGSGHPVATAVGLENLTVIEERDLMGNAARLERPFQ
DGLRAFRDNPLVGEVRGTGLIAAIEMVADRATKRSFEPLGKVGARAAAFAAEEGLLCRAL
GDTLALCPPLIVTEADVGGILERMGRALDRTATWAQAEGLI
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory