Comparing WP_083442028.1 NCBI__GCF_000969705.1:WP_083442028.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3oo6A Crystal structures and biochemical characterization of the bacterial solute receptor acbh reveal an unprecedented exclusive substrate preference for b-d-galactopyranose (see paper)
27% identity, 42% coverage: 154:353/472 of query aligns to 87:268/390 of 3oo6A
Sites not aligning to the query:
3vxcA Crystal structure of xylobiose-bxle complex from streptomyces thermoviolaceus opc-520
31% identity, 34% coverage: 120:280/472 of query aligns to 57:212/398 of 3vxcA
Sites not aligning to the query:
4c1tA Structure of the xylo-oligosaccharide specific solute binding protein from bifidobacterium animalis subsp. Lactis bl-04 in complex with arabinoxylotriose (see paper)
30% identity, 35% coverage: 122:288/472 of query aligns to 61:221/396 of 4c1tA
Sites not aligning to the query:
2b3fA Thermus thermophilus glucose/galactose binding protein bound with galactose (see paper)
28% identity, 35% coverage: 115:280/472 of query aligns to 53:211/392 of 2b3fA
Sites not aligning to the query:
2b3bC Thermus thermophilus glucose/galactose binding protein with bound glucose (see paper)
28% identity, 35% coverage: 115:280/472 of query aligns to 53:211/392 of 2b3bC
Sites not aligning to the query:
2b3bA Thermus thermophilus glucose/galactose binding protein with bound glucose (see paper)
28% identity, 35% coverage: 115:280/472 of query aligns to 53:211/392 of 2b3bA
Sites not aligning to the query:
7ehpA Chitin oligosaccharide binding protein (see paper)
26% identity, 38% coverage: 100:277/472 of query aligns to 40:206/397 of 7ehpA
Sites not aligning to the query:
4g68A Biochemical and structural insights into xylan utilization by the thermophilic bacteriumcaldanaerobius polysaccharolyticus (see paper)
24% identity, 43% coverage: 105:307/472 of query aligns to 41:237/392 of 4g68A
Sites not aligning to the query:
2i58A Crystal structure of rafe from streptococcus pneumoniae complexed with raffinose
37% identity, 25% coverage: 115:234/472 of query aligns to 49:160/385 of 2i58A
Sites not aligning to the query:
6preA Sbp rafe in complex with verbascose (see paper)
37% identity, 25% coverage: 115:234/472 of query aligns to 50:161/386 of 6preA
Sites not aligning to the query:
7vfqC Wild type glta from bifidobacterium infantis jcm 1222 complexed with lacto-n-tetraose
27% identity, 32% coverage: 116:268/472 of query aligns to 55:214/397 of 7vfqC
Sites not aligning to the query:
5ci5A Crystal structure of an abc transporter solute binding protein from thermotoga lettingae tmo (tlet_1705, target efi-510544) bound with alpha-d-tagatose
29% identity, 24% coverage: 104:216/472 of query aligns to 40:153/393 of 5ci5A
Sites not aligning to the query:
4qrzA Crystal structure of sugar transporter atu4361 from agrobacterium fabrum c58, target efi-510558, with bound maltotriose
32% identity, 21% coverage: 119:216/472 of query aligns to 53:152/383 of 4qrzA
Sites not aligning to the query:
4qsdA Crystal structure of atu4361 sugar transporter from agrobacterium fabrum c58, target efi-510558, with bound sucrose
32% identity, 21% coverage: 119:216/472 of query aligns to 53:152/382 of 4qsdA
Sites not aligning to the query:
7ehqA Chitin oligosaccharide binding protein (see paper)
24% identity, 33% coverage: 123:280/472 of query aligns to 75:216/406 of 7ehqA
Sites not aligning to the query:
4r9gA Cpmnbp1 with mannotriose bound (see paper)
31% identity, 19% coverage: 111:199/472 of query aligns to 47:132/394 of 4r9gA
Sites not aligning to the query:
4r9fA Cpmnbp1 with mannobiose bound (see paper)
31% identity, 19% coverage: 109:199/472 of query aligns to 53:140/402 of 4r9fA
Sites not aligning to the query:
4r2bA Crystal structure of sugar transporter oant_3817 from ochrobactrum anthropi, target efi-510528, with bound glucose
28% identity, 23% coverage: 110:218/472 of query aligns to 51:157/395 of 4r2bA
Sites not aligning to the query:
5dvjA Crystal structure of galactose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86 (see paper)
25% identity, 28% coverage: 122:255/472 of query aligns to 69:185/396 of 5dvjA
Sites not aligning to the query:
5dviA High resolution crystal structure of glucose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86 (see paper)
25% identity, 28% coverage: 122:255/472 of query aligns to 69:185/396 of 5dviA
Sites not aligning to the query:
>WP_083442028.1 NCBI__GCF_000969705.1:WP_083442028.1
MPHQRTRENAVLVTKRSLRPIAAAATVALVAAACGGDGGSAADGAAADDVGAAPAHCGDI
QPEDLDGAGVSIFGAPTSVEADAFNAVIEDCFNGPFNANGVYEGSDSFETQVLVRIEGGN
APDIAMYPQPGSIIELAERGTAIALEDLGFDTAELEATFGEYLLSLGEFEGKHYGLPTNV
SLKSLIWYNKPVFEANGYEIPETWDELLALSQQIVDDGSAEAPFCIGTGSDAATGWPATD
WLEDVMLRTAGPDTYDQWVSHEIPFDDPAVVDAANTFAEIAFNPDFVVGRTSDIPGVDFR
DAAHGMFSPSIEEPACVLHRQASFITSFFPEETEVGTDVDVFPFPAVDPDQPTAALIAGE
LAAVLNDTPAVRAFLSTLISEGVQCTLGGYEGVQRISPNVNTSGDCYTDDVVARSADTIV
EALKAGGARFDASDLMPSIVGTGSFWTAMNEWMRGADIEQVLADVEASWPSS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory