SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_083491884.1 NCBI__GCF_001431535.1:WP_083491884.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3zo7B Crystal structure of clcfe27a with substrate (see paper)
31% identity, 42% coverage: 1:93/219 of query aligns to 1:93/94 of 3zo7B

query
sites
3zo7B
M
 
M
I
 
L
F
 
Y
L
 
L
L
 
V
N
 
R
I
 
M
V
 
T
V
 
V
R
 
N
F
 
L
D
 
P
A
 
R
T
 
N
V
 
L
D
 
D
Q
 
P
D
 
R
R
 
E
R
 
E
L
 
E
D
 
R
L
 
L
L
 
K
T
 
A
K
 
S
E
x
A
H
 
K
A
 
A
I
 
R
A
 
S
K
 
R
E
 
T
H
 
L
M
 
Q
A
 
E
A
 
Q
G
 
G
R
 
Q
L
 
W
R
 
R
H
 
Y
I
 
L
W
 
W
R
|
R
T
 
T
P
 
T
A
 
G
Q
 
K
Q
 
Y
G
 
G
N
|
N
W
 
I
S
 
S
I
 
V
W
 
F
E
 
D
V
 
V
D
 
N
H
 
S
P
 
H
T
 
D
E
 
E
L
 
L
H
 
H
D
 
E
I
 
I
V
 
L
S
 
W
S
 
S
L
 
L
P
 
P
L
x
F
Y
 
F
P
 
P
W
 
Y
M
 
L
T
 
T
L
 
I
S
 
D
V
 
V
H
 
E
A
 
P
L
 
L
A
 
S
D
 
H
H
 
H
P
 
P
V
 
A
S
 
R
E
 
V
G
 
G
S
 
K

Query Sequence

>WP_083491884.1 NCBI__GCF_001431535.1:WP_083491884.1
MIFLLNIVVRFDATVDQDRRLDLLTKEHAIAKEHMAAGRLRHIWRTPAQQGNWSIWEVDH
PTELHDIVSSLPLYPWMTLSVHALADHPVSEGSPPDHGVEPVLEGFAQGQVSREDAEGSS
GTHMLVSYAGRLGDRFDREYYMTRHIPMVEEAWMPLGLQSTDVLFSANGDQEIAAVCLCK
FKTEGAMHAALSAPETVAIMSDIERFTDIAPTRRILAGP

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory