SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_083492046.1 NCBI__GCF_001431535.1:WP_083492046.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

1sz2B Crystal structure of e. Coli glucokinase in complex with glucose (see paper)
33% identity, 83% coverage: 56:366/374 of query aligns to 5:310/320 of 1sz2B

query
sites
1sz2B
L
 
L
A
 
V
A
 
G
D
 
D
V
 
V
G
 
G
G
 
G
T
 
T
H
 
N
V
 
A
R
 
R
V
 
L
A
 
A
R
 
L
V
 
C
E
 
D
-
 
I
A
 
A
S
 
S
G
 
G
D
 
E
A
 
I
A
 
S
H
 
Q
P
 
A
V
 
-
R
 
-
V
 
-
L
 
-
D
 
-
Y
 
-
R
 
K
K
 
T
Y
 
Y
R
 
S
N
 
G
A
 
L
D
 
D
H
 
Y
P
 
P
G
 
S
L
 
L
G
 
E
A
 
A
I
 
V
L
 
I
S
 
R
D
 
V
F
 
Y
L
 
L
G
 
E
D
 
E
-
 
H
G
 
K
M
 
V
R
 
E
P
 
V
A
 
K
H
 
D
C
 
G
V
 
C
V
 
I
A
 
A
T
 
I
A
 
A
G
x
C
Y
x
P
A
 
I
R
 
T
E
 
G
D
 
D
G
 
W
T
 
V
V
 
A
I
 
M
T
 
T
A
 
-
N
 
N
V
 
H
P
 
T
W
 
W
P
 
A
L
 
F
S
 
S
A
 
I
R
 
A
Q
 
E
L
 
M
E
 
K
T
 
K
E
 
N
V
 
L
G
 
G
V
 
F
Q
 
S
H
 
H
V
 
L
H
 
E
I
 
I
V
 
I
N
|
N
D
|
D
F
 
F
E
 
T
A
 
A
V
 
V
A
 
S
H
 
M
A
 
A
A
 
I
A
 
P
Q
 
M
V
 
L
D
 
K
A
 
K
S
 
E
G
 
H
V
 
L
L
 
I
Q
 
Q
L
 
F
C
 
G
G
 
G
P
 
A
H
 
E
S
 
P
A
 
V
P
 
E
I
 
G
G
 
K
P
 
P
T
 
I
L
 
A
V
 
V
V
 
Y
G
 
G
P
 
A
G
 
G
T
 
T
G
 
G
L
|
L
G
|
G
A
 
V
A
 
A
L
 
H
W
 
L
I
 
V
P
 
H
T
 
V
A
 
D
H
 
K
G
 
R
P
 
W
V
 
V
V
 
S
L
 
L
A
 
P
T
 
G
E
|
E
A
 
G
G
 
G
Q
x
H
A
 
V
S
 
D
L
 
F
A
 
A
A
 
P
S
 
N
D
 
S
A
 
E
L
 
-
E
 
E
M
 
E
A
 
A
I
 
I
L
 
I
R
 
L
H
 
E
M
 
I
L
 
L
R
 
R
G
 
A
R
 
E
-
 
I
S
 
G
H
 
H
V
 
V
S
 
S
V
 
A
E
|
E
H
 
R
A
 
V
L
 
L
S
 
S
G
 
G
P
 
P
G
 
G
L
 
L
I
 
V
N
 
N
L
 
L
Y
 
Y
T
 
R
A
 
A
L
 
I
C
 
V
A
 
K
L
 
A
E
 
D
D
 
N
R
 
R
P
 
L
A
 
P
L
 
E
L
 
N
G
 
L
S
 
K
P
 
P
D
 
K
A
 
D
V
 
I
T
 
T
A
 
E
A
 
R
A
 
A
I
 
L
A
 
A
G
 
D
T
 
S
D
 
C
A
 
T
L
 
D
A
 
C
R
 
R
R
 
R
A
 
A
L
 
L
D
 
S
V
 
L
F
 
F
C
 
C
G
 
V
L
 
I
L
 
M
G
 
G
S
 
R
T
 
F
V
 
G
G
 
G
D
 
N
M
 
L
A
 
A
L
 
L
M
 
N
Y
 
L
G
 
G
A
 
T
H
 
F
G
 
G
G
 
G
V
 
V
Y
 
F
L
 
I
A
 
A
G
 
G
G
 
G
I
 
I
L
 
V
P
 
P
K
 
R
I
 
F
R
 
L
D
 
E
Y
 
F
L
 
F
R
 
K
D
 
A
S
 
S
T
 
G
F
 
F
V
 
R
A
 
A
R
 
A
Y
 
F
L
 
E
N
 
D
K
 
K
G
 
G
P
 
R
M
 
F
S
 
K
E
 
E
A
 
Y
L
 
V
Q
 
H
R
 
D
I
 
I
P
 
P
V
 
V
K
 
Y
V
 
L
V
 
I
E
 
V
H
 
H
G
 
D
Q
 
N
L
 
P
G
 
G
V
 
L
I
 
L
G
 
G
A
 
S
A
 
G
S
 
A

Query Sequence

>WP_083492046.1 NCBI__GCF_001431535.1:WP_083492046.1
MQQRKIHQVVDIVVNTASYSAHRRVNHGPHSAGARVTAASHPAPTHALSTAAPGFLAADV
GGTHVRVARVEASGDAAHPVRVLDYRKYRNADHPGLGAILSDFLGDGMRPAHCVVATAGY
AREDGTVITANVPWPLSARQLETEVGVQHVHIVNDFEAVAHAAAQVDASGVLQLCGPHSA
PIGPTLVVGPGTGLGAALWIPTAHGPVVLATEAGQASLAASDALEMAILRHMLRGRSHVS
VEHALSGPGLINLYTALCALEDRPALLGSPDAVTAAAIAGTDALARRALDVFCGLLGSTV
GDMALMYGAHGGVYLAGGILPKIRDYLRDSTFVARYLNKGPMSEALQRIPVKVVEHGQLG
VIGAASWYLGQQPR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory