SitesBLAST
Comparing WP_083777758.1 NCBI__GCF_000025505.1:WP_083777758.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
Q7WTU0 Arsenate respiratory reductase molybdopterin-containing subunit ArrA; Arsenate respiratory reductase large subunit; ARR large subunit; EC 1.20.99.1 from Shewanella sp. (strain ANA-3) (see paper)
25% identity, 100% coverage: 2:816/817 of query aligns to 64:853/854 of Q7WTU0
- C64 (= C2) binding [4Fe-4S] cluster
- C68 (= C6) binding [4Fe-4S] cluster
- C96 (= C35) binding [4Fe-4S] cluster
- R165 (≠ H103) binding arsenite
- Y166 (≠ G104) binding arsenate
- H189 (≠ R128) binding arsenite
- S190 (≠ T129) binding arsenate
- C193 (= C132) binding Mo-bis(molybdopterin guanine dinucleotide)
- K198 (≠ H137) binding arsenate
- Y210 (≠ G146) binding arsenite
Sites not aligning to the query:
- 61 binding [4Fe-4S] cluster
6czaA The arsenate respiratory reductase (arr) complex from shewanella sp. Ana-3 bound to phosphate (see paper)
25% identity, 100% coverage: 2:816/817 of query aligns to 24:813/814 of 6czaA
- active site: R58 (≠ K37), C153 (= C132), A154 (≠ E133), R334 (= R358)
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: C24 (= C2), T25 (≠ V3), R58 (≠ K37), H149 (≠ R128), V152 (≠ T131), C153 (= C132), G185 (= G163), A190 (vs. gap), S191 (vs. gap), N192 (vs. gap), D215 (≠ E194), P216 (= P195), R217 (= R196), P233 (= P212), D236 (= D215), S333 (≠ F357), R334 (= R358), R334 (= R358), G335 (= G359), F441 (≠ N456), N442 (≠ R457), N443 (≠ P458), F444 (= F459), S447 (= S462), T468 (≠ D480), T469 (≠ I481), S472 (≠ T484), S484 (≠ D496), H487 (≠ Y499), D521 (≠ Q532), V681 (≠ I694), D682 (≠ T695), K684 (= K697), K684 (= K697), R686 (≠ M699), N688 (= N702), E690 (≠ S704), E690 (≠ S704), G691 (= G705), R692 (≠ Y706), F762 (≠ Y771), Y769 (≠ P778), N787 (= N791), F803 (= F807), Y804 (vs. gap)
- binding phosphate ion: Y126 (≠ G104), S150 (≠ T129), K158 (≠ H137)
- binding iron/sulfur cluster: C24 (= C2), S26 (≠ N4), W27 (≠ F5), C28 (= C6), K30 (≠ I8), C56 (= C35), R58 (≠ K37), S196 (≠ Y166)
Sites not aligning to the query:
6cz9A The arsenate respiratory reductase (arr) complex from shewanella sp. Ana-3 bound to arsenite (see paper)
25% identity, 100% coverage: 2:816/817 of query aligns to 24:813/814 of 6cz9A
- active site: R58 (≠ K37), C153 (= C132), A154 (≠ E133), R334 (= R358)
- binding arsenite: R125 (≠ H103), Y126 (≠ G104), H149 (≠ R128), C153 (= C132), Y170 (≠ G146)
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: C24 (= C2), T25 (≠ V3), R58 (≠ K37), H149 (≠ R128), V152 (≠ T131), C153 (= C132), G185 (= G163), A190 (vs. gap), S191 (vs. gap), N192 (vs. gap), D215 (≠ E194), P216 (= P195), R217 (= R196), P233 (= P212), D236 (= D215), S333 (≠ F357), R334 (= R358), R334 (= R358), G335 (= G359), F441 (≠ N456), N442 (≠ R457), N443 (≠ P458), F444 (= F459), S447 (= S462), T468 (≠ D480), T469 (≠ I481), S472 (≠ T484), S484 (≠ D496), H487 (≠ Y499), D521 (≠ Q532), D682 (≠ T695), K684 (= K697), K684 (= K697), S685 (≠ R698), R686 (≠ M699), N688 (= N702), E690 (≠ S704), E690 (≠ S704), G691 (= G705), R692 (≠ Y706), F762 (≠ Y771), Y769 (≠ P778), N787 (= N791), F803 (= F807), Y804 (vs. gap)
- binding iron/sulfur cluster: C24 (= C2), S26 (≠ N4), W27 (≠ F5), C28 (= C6), K30 (≠ I8), C56 (= C35), R58 (≠ K37), S196 (≠ Y166)
Sites not aligning to the query:
6cz8A The arsenate respiratory reductase (arr) complex from shewanella sp. Ana-3 bound to arsenate (see paper)
25% identity, 100% coverage: 2:816/817 of query aligns to 24:813/814 of 6cz8A
- active site: R58 (≠ K37), C153 (= C132), A154 (≠ E133), R334 (= R358)
- binding arsenate: R125 (≠ H103), Y126 (≠ G104), H149 (≠ R128), C153 (= C132), Y170 (≠ G146)
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: C24 (= C2), R58 (≠ K37), H149 (≠ R128), V152 (≠ T131), C153 (= C132), G185 (= G163), A190 (vs. gap), S191 (vs. gap), N192 (vs. gap), D215 (≠ E194), P216 (= P195), R217 (= R196), P233 (= P212), D236 (= D215), S333 (≠ F357), R334 (= R358), R334 (= R358), G335 (= G359), F441 (≠ N456), N442 (≠ R457), N443 (≠ P458), F444 (= F459), S447 (= S462), T468 (≠ D480), T469 (≠ I481), S472 (≠ T484), S484 (≠ D496), H487 (≠ Y499), D521 (≠ Q532), D682 (≠ T695), K684 (= K697), K684 (= K697), R686 (≠ M699), N688 (= N702), E690 (≠ S704), E690 (≠ S704), G691 (= G705), R692 (≠ Y706), F762 (≠ Y771), Y769 (≠ P778), N787 (= N791), F803 (= F807), Y804 (vs. gap)
- binding oxygen atom: R125 (≠ H103), H149 (≠ R128)
- binding iron/sulfur cluster: C24 (= C2), S26 (≠ N4), W27 (≠ F5), C28 (= C6), K30 (≠ I8), C56 (= C35), R58 (≠ K37), S196 (≠ Y166)
Sites not aligning to the query:
6cz7A The arsenate respiratory reductase (arr) complex from shewanella sp. Ana-3 (see paper)
25% identity, 100% coverage: 2:816/817 of query aligns to 24:813/814 of 6cz7A
- active site: R58 (≠ K37), C153 (= C132), A154 (≠ E133), R334 (= R358)
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: C24 (= C2), T25 (≠ V3), R58 (≠ K37), H149 (≠ R128), V152 (≠ T131), C153 (= C132), G185 (= G163), A190 (vs. gap), S191 (vs. gap), N192 (vs. gap), D215 (≠ E194), P216 (= P195), R217 (= R196), P233 (= P212), D236 (= D215), S333 (≠ F357), R334 (= R358), R334 (= R358), G335 (= G359), F441 (≠ N456), N442 (≠ R457), N443 (≠ P458), F444 (= F459), S447 (= S462), T468 (≠ D480), T469 (≠ I481), S472 (≠ T484), S484 (≠ D496), H487 (≠ Y499), D521 (≠ Q532), V681 (≠ I694), D682 (≠ T695), D682 (≠ T695), K684 (= K697), K684 (= K697), R686 (≠ M699), N688 (= N702), E690 (≠ S704), E690 (≠ S704), G691 (= G705), R692 (≠ Y706), F762 (≠ Y771), Y769 (≠ P778), N787 (= N791), F803 (= F807), Y804 (vs. gap)
- binding iron/sulfur cluster: C24 (= C2), S26 (≠ N4), W27 (≠ F5), C28 (= C6), K30 (≠ I8), C56 (= C35), R58 (≠ K37), V195 (vs. gap), S196 (≠ Y166)
Sites not aligning to the query:
2vpwA Polysulfide reductase with bound menaquinone (see paper)
28% identity, 61% coverage: 2:503/817 of query aligns to 18:460/734 of 2vpwA
- active site: R52 (≠ K37), H116 (= H103), D120 (= D110), K138 (≠ H127), C144 (= C132), T145 (≠ E133), R303 (≠ E364), Y335 (vs. gap), P340 (= P394), Y341 (≠ G395), P351 (vs. gap)
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: R52 (≠ K37), H116 (= H103), L143 (vs. gap), C144 (= C132), G178 (= G163), H179 (≠ G164), H180 (≠ N165), D184 (≠ A169), T185 (≠ D170), H186 (≠ Q171), V206 (= V193), D207 (≠ E194), P208 (= P195), R209 (= R196), D228 (= D215), T302 (≠ K363), R303 (≠ E364), H304 (= H365), W307 (vs. gap), Y308 (vs. gap), G410 (≠ A454), I411 (≠ T455), N412 (= N456), H415 (≠ F459), S416 (= S460), I436 (= I479), D437 (= D480), Q441 (≠ T484), E453 (≠ D496), R459 (≠ A502)
- binding iron/sulfur cluster: C18 (= C2), W20 (≠ N4), C22 (= C6), L49 (≠ N34), C50 (= C35), R52 (≠ K37), G53 (= G38), N187 (≠ W172)
Sites not aligning to the query:
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: 593, 594, 596, 596, 600, 601, 602, 602, 603, 604, 668, 687, 688, 706
- binding iron/sulfur cluster: 15, 17
7vw6A Cryo-em structure of formate dehydrogenase 1 from methylorubrum extorquens am1 (see paper)
27% identity, 66% coverage: 5:543/817 of query aligns to 229:716/913 of 7vw6A
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: K263 (= K37), K339 (= K105), C364 (≠ R128), C368 (= C132), G402 (= G163), N404 (= N165), N408 (≠ E168), D431 (≠ E194), P432 (= P195), R433 (= R196), F447 (≠ I210), G450 (= G213), D452 (= D215), G525 (= G344), M526 (≠ K345), G527 (= G359), Q530 (≠ A362), H531 (≠ K363), G563 (= G395), Q564 (≠ S396), G630 (vs. gap), N632 (= N456), S636 (= S460), Q656 (vs. gap), D657 (= D480), L658 (≠ I481)
- binding iron/sulfur cluster: C230 (= C6), C234 (≠ V10), C261 (= C35), K263 (= K37), G264 (= G38), V411 (≠ Q171)
Sites not aligning to the query:
- binding fe2/s2 (inorganic) cluster: 32, 34, 35, 45, 47, 48, 50, 64
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: 805, 807, 807, 808, 809, 811, 812, 813, 813, 814, 817, 879, 887, 903, 904
- binding iron/sulfur cluster: 145, 146, 147, 148, 149, 151, 155, 161, 163, 164, 175, 188, 189, 190, 191, 192, 194, 198, 199, 200, 202, 203, 227
A0A369NIV7 Dopamine dehydroxylase; EC 1.1.-.- from Eggerthella lenta (Eubacterium lentum) (see paper)
31% identity, 30% coverage: 6:250/817 of query aligns to 61:300/1017 of A0A369NIV7
Sites not aligning to the query:
- 506 Crucial for dopamine dehydroxylation activity
2ivfA Ethylbenzene dehydrogenase from aromatoleum aromaticum (see paper)
26% identity, 40% coverage: 6:329/817 of query aligns to 28:370/912 of 2ivfA
- active site: K65 (= K37), P127 (≠ E111), D156 (≠ H137), I157 (≠ V138)
- binding phosphoric acid 4-(2-amino-4-oxo-3,4,5,6,-tetrahydro-pteridin-6-yl)-2-hydroxy-3,4-dimercapto-but-3-en-yl ester guanylate ester: H128 (≠ W112), H130 (≠ K114), A131 (= A115), I157 (≠ V138), D159 (= D140)
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: D159 (= D140), C190 (≠ A169), S191 (≠ D170), N192 (≠ Q171), Y195 (≠ R174), T196 (≠ W175), I217 (≠ V193), P219 (= P195), D220 (≠ R196), N222 (≠ S198), G237 (= G213), D239 (= D215)
- binding iron/sulfur cluster: C28 (= C6), F30 (≠ I8), G62 (≠ N34), C63 (= C35), G66 (= G38)
Sites not aligning to the query:
- active site: 430
- binding phosphoric acid 4-(2-amino-4-oxo-3,4,5,6,-tetrahydro-pteridin-6-yl)-2-hydroxy-3,4-dimercapto-but-3-en-yl ester guanylate ester: 386, 543, 544, 545, 548, 549, 551, 571, 572, 573, 574, 588, 590, 591, 594, 623, 785, 791, 792, 856, 868, 869, 903
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: 21, 23, 381, 382, 383, 783, 784, 785, 786, 789, 790, 791
- binding iron/sulfur cluster: 18, 22, 26
P18775 Dimethyl sulfoxide reductase DmsA; DMSO reductase; DMSOR; Me2SO reductase; EC 1.8.5.3 from Escherichia coli (strain K12) (see 4 papers)
25% identity, 67% coverage: 2:552/817 of query aligns to 67:585/814 of P18775
- C67 (= C2) mutation to S: Electron transfer from the 4Fe-4S clusters of DmsB to the Mo-bisMGD of DmsA is blocked. Little effect on the coordination sphere of the molybdenum and only minor effects on its redox chemistry.
- C71 (= C6) mutation to S: Cannot support growth.
- C104 (= C35) mutation to S: No alteration of the growth, expression, or catalytic activities.
- R106 (≠ K37) mutation to S: Electron transfer from the 4Fe-4S clusters of DmsB to the Mo-bisMGD of DmsA is blocked. Little effect on the coordination sphere of the molybdenum and only minor effects on its redox chemistry.
Sites not aligning to the query:
- 1:45 signal peptide, Tat-type signal
- 17 R→S: Not targeted to the membrane, does not support anaerobic growth.
- 57 K→D: No alteration of the growth, expression, or catalytic activities.
1h0hA Tungsten containing formate dehydrogenase from desulfovibrio gigas (see paper)
25% identity, 47% coverage: 2:388/817 of query aligns to 20:401/977 of 1h0hA
- active site: K56 (= K37), C158 (= C132), H159 (≠ E133), M371 (≠ F357)
- binding guanylate-o'-phosphoric acidmono-(2-amino-5,6-dimercapto-4-oxo-3,5,6,7,8a,9,10,10a-octahydro-4h-8-oxa-1,3,9,10-tetraaza-anthracen-7-ylmethyl) ester: A130 (vs. gap), Q154 (≠ R128), I157 (≠ T131), C158 (= C132), M371 (≠ F357)
- binding calcium ion: T358 (≠ N333), K360 (≠ R335), K363 (≠ S338), L393 (≠ V380), G394 (= G381), N395 (≠ A382)
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: K56 (= K37), C158 (= C132), S193 (≠ G164), N194 (= N165), N198 (≠ A169), D220 (≠ E194), P221 (= P195), R222 (= R196), S238 (≠ P212), G239 (= G213), D241 (= D215), A370 (≠ T356), M371 (≠ F357), W373 (≠ L360)
- binding iron/sulfur cluster: C20 (= C2), V22 (≠ N4), C24 (= C6), L53 (vs. gap), C54 (= C35), K56 (= K37), G57 (= G38), P200 (≠ Q171), I201 (≠ W172)
Sites not aligning to the query:
- active site: 407, 408, 409
- binding guanylate-o'-phosphoric acidmono-(2-amino-5,6-dimercapto-4-oxo-3,5,6,7,8a,9,10,10a-octahydro-4h-8-oxa-1,3,9,10-tetraaza-anthracen-7-ylmethyl) ester: 516, 517, 518, 522, 543, 544, 572, 605, 854, 856, 862, 863, 866, 936, 951, 967
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: 408, 855, 856, 858, 860, 861, 862, 968
- binding iron/sulfur cluster: 17, 19
2iv2X Reinterpretation of reduced form of formate dehydrogenase h from e. Coli (see paper)
24% identity, 100% coverage: 2:817/817 of query aligns to 11:694/697 of 2iv2X
- active site: C11 (= C2), L41 (vs. gap), C42 (= C35), K44 (= K37), S108 (≠ H103), C140 (= C132), H141 (≠ E133), S180 (≠ Q171), M297 (≠ I336), R333 (≠ A372), G334 (≠ A373), Q335 (≠ L374)
- binding guanylate-o'-phosphoric acidmono-(2-amino-5,6-dimercapto-4-oxo-3,5,6,7,8a,9,10,10a-octahydro-4h-8-oxa-1,3,9,10-tetraaza-anthracen-7-ylmethyl) ester: R110 (≠ K105), G111 (≠ Y106), T112 (≠ L107), A137 (≠ T129), Q335 (≠ L374), G402 (≠ M435), E403 (≠ L436), D404 (= D437), T408 (= T455), A410 (≠ R457), Q428 (≠ I479), D429 (= D480), I430 (= I481), S445 (≠ D496), D478 (≠ N533), C588 (≠ Y700), Y660 (≠ W783)
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: K44 (= K37), F173 (≠ G164), G174 (≠ N165), Y175 (= Y166), N176 (≠ F167), D179 (= D170), S180 (≠ Q171), D202 (≠ E194), P203 (= P195), R204 (= R196), N223 (≠ D215), G296 (vs. gap), M297 (≠ I336), F302 (≠ V341), G334 (≠ A373), R581 (≠ K697), E582 (≠ R698), V583 (≠ M699), H585 (vs. gap), Y586 (vs. gap), S587 (vs. gap), K661 (≠ A784)
- binding iron/sulfur cluster: C11 (= C2), S13 (≠ N4), C15 (= C6), L41 (vs. gap), C42 (= C35), K44 (= K37), G45 (= G38), I183 (≠ R174)
Sites not aligning to the query:
Q934F5 Formate dehydrogenase subunit alpha; FDH subunit alpha; Formate dehydrogenase large subunit; EC 1.17.1.9 from Megalodesulfovibrio gigas (Desulfovibrio gigas) (see paper)
25% identity, 47% coverage: 2:388/817 of query aligns to 55:436/1012 of Q934F5
- C55 (= C2) binding [4Fe-4S] cluster
- C59 (= C6) binding [4Fe-4S] cluster
- C89 (= C35) binding [4Fe-4S] cluster
- U193 (≠ C132) binding W-bis(molybdopterin guanine dinucleotide); modified: nonstandard, Selenocysteine
Sites not aligning to the query:
- 52 binding [4Fe-4S] cluster
- 852 modified: Disulfide link with 879
- 879 modified: Disulfide link with 852
1fdiA Oxidized form of formate dehydrogenase h from e. Coli complexed with the inhibitor nitrite (see paper)
24% identity, 95% coverage: 2:776/817 of query aligns to 11:657/715 of 1fdiA
- active site: C11 (= C2), L41 (vs. gap), C42 (= C35), K44 (= K37), S108 (≠ H103), R110 (≠ K105), D134 (≠ I126), C140 (= C132), H141 (≠ E133), S180 (≠ Q171), M297 (≠ I336), R333 (≠ A372), G334 (≠ A373), Q335 (≠ L374)
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: K44 (= K37), R110 (≠ K105), G111 (≠ Y106), V139 (≠ T131), C140 (= C132), F173 (≠ G164), G174 (≠ N165), Y175 (= Y166), N176 (≠ F167), D179 (= D170), S180 (≠ Q171), C201 (≠ V193), D202 (≠ E194), P203 (= P195), R204 (= R196), L218 (≠ I210), G221 (= G213), N223 (≠ D215), G296 (vs. gap), M297 (≠ I336), G298 (= G337), F302 (≠ V341), G334 (≠ A373), Q335 (≠ L374), Q335 (≠ L374), G402 (≠ M435), E403 (≠ L436), T408 (= T455), Q428 (≠ I479), D429 (= D480), I430 (= I481), S445 (≠ D496), D478 (≠ N533), T579 (= T695), V580 (≠ F696), R581 (≠ K697), R581 (≠ K697), E582 (≠ R698), H585 (vs. gap), Y586 (vs. gap), S587 (vs. gap), C588 (≠ Y700), Y654 (= Y773)
- binding nitrite ion: C140 (= C132), H141 (≠ E133), R333 (≠ A372), G334 (≠ A373), V338 (≠ M377)
- binding iron/sulfur cluster: C11 (= C2), S13 (≠ N4), C15 (= C6), L41 (vs. gap), C42 (= C35), K44 (= K37), P182 (≠ A173), I183 (≠ R174)
Sites not aligning to the query:
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: 662, 678, 679
- binding iron/sulfur cluster: 8, 10
P07658 Formate dehydrogenase H; Formate dehydrogenase-H subunit alpha; FDH-H; Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide; EC 1.17.98.4 from Escherichia coli (strain K12) (see 2 papers)
24% identity, 95% coverage: 2:776/817 of query aligns to 11:657/715 of P07658
- C11 (= C2) binding [4Fe-4S] cluster
- C15 (= C6) binding [4Fe-4S] cluster
- C42 (= C35) binding [4Fe-4S] cluster
- K44 (= K37) binding Mo-bis(molybdopterin guanine dinucleotide)
- U140 (≠ E133) modified: nonstandard, Selenocysteine
- M297 (≠ I336) binding Mo-bis(molybdopterin guanine dinucleotide)
- Q301 (≠ I340) binding Mo-bis(molybdopterin guanine dinucleotide)
- Q335 (≠ L374) binding Mo-bis(molybdopterin guanine dinucleotide)
- S445 (≠ D496) binding Mo-bis(molybdopterin guanine dinucleotide)
- D478 (≠ N533) binding Mo-bis(molybdopterin guanine dinucleotide)
- C588 (≠ Y700) binding Mo-bis(molybdopterin guanine dinucleotide)
- Y654 (= Y773) binding Mo-bis(molybdopterin guanine dinucleotide)
- Q655 (≠ G774) binding Mo-bis(molybdopterin guanine dinucleotide)
Sites not aligning to the query:
- 8 binding [4Fe-4S] cluster
- 10 binding [4Fe-4S] cluster
- 678 binding Mo-bis(molybdopterin guanine dinucleotide)
- 679 binding Mo-bis(molybdopterin guanine dinucleotide)
7qv7S Cryo-em structure of hydrogen-dependent co2 reductase. (see paper)
28% identity, 29% coverage: 2:241/817 of query aligns to 11:243/571 of 7qv7S
Sites not aligning to the query:
7b04B of Nitrite oxidoreductase (Nxr) from the anammox bacterium Kuenenia stuttgartiensis.
25% identity, 47% coverage: 6:387/817 of query aligns to 48:529/1120 of 7b04B
- binding phosphoric acid 4-(2-amino-4-oxo-3,4,5,6,-tetrahydro-pteridin-6-yl)-2-hydroxy-3,4-dimercapto-but-3-en-yl ester guanylate ester: K90 (= K37), H246 (vs. gap), D248 (vs. gap), D248 (vs. gap), T278 (≠ M162), G279 (= G163), K280 (≠ G164), N281 (= N165), N285 (≠ A169), K286 (≠ D170), M287 (≠ Q171), I306 (≠ V193), P308 (= P195), E309 (≠ R196), N325 (≠ P212), D328 (= D215), G499 (≠ F357), E500 (≠ R358), G501 (= G359), V502 (≠ L360), H504 (≠ A362), Y505 (≠ K363)
- binding iron/sulfur cluster: C48 (= C6), M87 (vs. gap), C88 (= C35), G91 (= G38)
Sites not aligning to the query:
- binding phosphoric acid 4-(2-amino-4-oxo-3,4,5,6,-tetrahydro-pteridin-6-yl)-2-hydroxy-3,4-dimercapto-but-3-en-yl ester guanylate ester: 536, 537, 626, 627, 628, 632, 634, 653, 654, 673, 707, 888, 889, 890, 890, 891, 894, 895, 896, 896, 897, 898, 993, 1030, 1071, 1072
- binding iron/sulfur cluster: 40, 44
2jirA A new catalytic mechanism of periplasmic nitrate reductase from desulfovibrio desulfuricans atcc 27774 from crystallographic and epr data and based on detailed analysis of the sixth ligand (see paper)
24% identity, 70% coverage: 2:572/817 of query aligns to 13:531/720 of 2jirA
- active site: K46 (= K37), S106 (≠ H103), C137 (= C132), M138 (≠ E133), A177 (= A169), M305 (≠ I342), T341 (≠ V380), G342 (= G381), Q343 (≠ A382)
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: K46 (= K37), Q108 (≠ K105), C137 (= C132), G171 (= G163), S172 (≠ G164), N173 (= N165), E176 (= E168), A177 (= A169), D201 (≠ E194), P202 (= P195), R203 (= R196), F217 (≠ I210), D222 (= D215), C304 (≠ V341), M305 (≠ I342), G306 (= G344), Q309 (≠ L347), R310 (= R348), G342 (= G381), Q343 (≠ A382), Q343 (≠ A382), E413 (≠ A454), T414 (= T455), N415 (= N456), T419 (≠ S460), I440 (= I481), E441 (≠ T482), A442 (≠ M483), P458 (≠ D496), F460 (≠ T498)
- binding iron/sulfur cluster: C13 (= C2), T15 (≠ N4), C17 (= C6), L43 (≠ F30), C44 (= C35), P179 (≠ Q171), V180 (≠ A173)
Sites not aligning to the query:
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: 11, 612, 613, 614, 614, 616, 618, 619, 620, 620, 621, 623, 686, 694, 710, 711
- binding nitrite ion: 615, 686
- binding iron/sulfur cluster: 10
2v45A A new catalytic mechanism of periplasmic nitrate reductase from desulfovibrio desulfuricans atcc 27774 from crystallographic and epr data and based on detailed analysis of the sixth ligand (see paper)
24% identity, 70% coverage: 2:572/817 of query aligns to 16:534/723 of 2v45A
- active site: K49 (= K37), S109 (≠ H103), C140 (= C132), M141 (≠ E133), A180 (= A169), M308 (≠ I342), T344 (≠ V380), G345 (= G381), Q346 (≠ A382)
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: K49 (= K37), Q111 (≠ K105), C140 (= C132), G174 (= G163), N176 (= N165), E179 (= E168), A180 (= A169), D204 (≠ E194), P205 (= P195), R206 (= R196), P222 (= P212), D225 (= D215), C307 (≠ V341), M308 (≠ I342), G309 (= G344), Q312 (≠ L347), R313 (= R348), G345 (= G381), Q346 (≠ A382), Q346 (≠ A382), E416 (≠ A454), T417 (= T455), N418 (= N456), T422 (≠ S460), I443 (= I481), E444 (≠ T482), A445 (≠ M483), F446 (vs. gap), P461 (≠ D496), F463 (≠ T498)
- binding iron/sulfur cluster: C16 (= C2), T18 (≠ N4), C20 (= C6), L46 (≠ F30), C47 (= C35), V183 (≠ A173)
Sites not aligning to the query:
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: 14, 615, 616, 617, 617, 618, 619, 621, 622, 623, 623, 624, 626, 689, 697, 713, 714
- binding iron/sulfur cluster: 13
2jiqA A new catalytic mechanism of periplasmic nitrate reductase from desulfovibrio desulfuricans atcc 27774 from crystallographic and epr data and based on detailed analysis of the sixth ligand (see paper)
25% identity, 70% coverage: 2:572/817 of query aligns to 13:531/720 of 2jiqA
- active site: K46 (= K37), S106 (≠ H103), C137 (= C132), M138 (≠ E133), A177 (= A169), M305 (≠ I342), T341 (≠ V380), G342 (= G381), Q343 (≠ A382)
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: Q108 (≠ K105), C137 (= C132), G171 (= G163), S172 (≠ G164), E176 (= E168), A177 (= A169), D201 (≠ E194), P202 (= P195), R203 (= R196), P219 (= P212), D222 (= D215), C304 (≠ V341), M305 (≠ I342), G306 (= G344), Q309 (≠ L347), R310 (= R348), G342 (= G381), Q343 (≠ A382), Q343 (≠ A382), E413 (≠ A454), T414 (= T455), N415 (= N456), T419 (≠ S460), I440 (= I481), E441 (≠ T482), F443 (vs. gap), P458 (≠ D496), F460 (≠ T498)
- binding nitrate ion: M251 (≠ I288)
- binding iron/sulfur cluster: C13 (= C2), T15 (≠ N4), C17 (= C6), L43 (vs. gap), C44 (= C35), V180 (≠ A173)
Sites not aligning to the query:
- binding 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide: 11, 612, 613, 614, 614, 616, 618, 619, 620, 620, 621, 623, 686, 694, 710, 711
- binding nitrate ion: 583, 589, 591, 593, 704
- binding iron/sulfur cluster: 10
Query Sequence
>WP_083777758.1 NCBI__GCF_000025505.1:WP_083777758.1
MCVNFCGIKVKVQNGVIRAIYPDEKRAPYFNWGNCPKGVSGMWNTYNPYRLKRPLKRTNP
KKGPNEDPGWVEISWEEAFNIVAEKLKQIRESDPRKLVWHHGHGKYLLDDEWMKAFTAAF
GTPNMIHRTTTCEASRHVADEITWGGHGALPDLEYCNYLINMGGNYFEADQWARWLDHAT
IEAKERGMKLVVVEPRLSNLAAKADEWVPIRPGKDVLFLLAMANVLISEGYVDRDFLVNY
TNAPFLVGEDGKFLRDENGNPLVWDTVTNSAKPYVEGVVPALEGEYEIDGKKYRTAFQVF
ADYVKDITPESVAEECGVPAEQIRRIAKEFGENARIGSTIVIDGKELRYRPVAIYTFRGL
SAKEHGTQNWRAALIVMQLVGAIDAVGGFLLHKPGSEKYMKPSKCEYPPSRIDLKKSVFL
PHATHDVAQQAMFSMLDPEKYGFDYKPEMQIFFATNRPFSTSNAEKQFEALAKTFNVVID
ITMTETAWYADVVFPDKTYLEAFGYYGGRWTPHARHHTLHYPIVNVFNIPYQNLEIMFEL
AKRAGFYDEFLEKINEKFKFKNPKFEKGKDYDAKAAFDILWRNKTGQPIEQGMRDGFYGK
FVSVEERYLHGAEEKFKGPNKPKMHLYCEELIHSAEKVIELMNKHENIRKVFEEWYETEN
VEEEVKIRLSPIPRKEHAYPTPHKKAKDYPLYLITFKRMYRNQSGYCNVNPILNQVSHDS
DYNDVWIHPETARKLKIDDGDKVVVESRVGKLVAIARVTEAIRPDTVAISYHYGHWSPGY
PEWARKGSWVNKILEYHPDMVSGMNSFNDTKVRIYKA
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory