SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_083780319.1 NCBI__GCF_000092905.1:WP_083780319.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

5odcC Heterodisulfide reductase / [nife]-hydrogenase complex from methanothermococcus thermolithotrophicus at 2.3 a resolution (see paper)
43% identity, 23% coverage: 26:119/403 of query aligns to 30:120/184 of 5odcC

query
sites
5odcC
S
 
S
L
 
L
G
 
K
Y
 
A
C
|
C
Y
|
Y
Q
|
Q
C
|
C
G
|
G
K
 
T
C
|
C
T
 
T
G
 
G
V
 
S
C
|
C
P
|
P
I
 
S
D
 
G
T
 
R
V
 
R
G
 
T
D
 
S
Y
|
Y
S
 
R
P
x
T
R
 
R
K
 
K
V
 
V
F
 
I
R
 
R
R
 
K
T
 
A
Q
 
L
L
 
L
G
 
G
A
 
M
S
 
D
-
 
D
L
 
V
L
 
L
D
 
D
S
 
S
P
 
D
D
 
D
L
 
I
W
 
W
L
 
K
C
|
C
T
|
T
T
|
T
C
|
C
R
x
Y
N
 
T
C
|
C
L
 
Y
R
 
E
V
 
R
C
|
C
P
|
P
K
 
R
E
 
D
V
|
V
N
 
K
M
 
V
I
 
T
K
 
E
I
 
I
M
 
I
P
 
K
A
 
T
V
 
I
R
 
R
E
 
N
K
 
L
A
 
A
V
 
A
L
 
Q
E
 
K
G
 
G
K
 
N
A
 
M
P
 
A
K
 
K
E
 
-
L
 
-
L
 
-
D
 
-
A
 
A
F
 
H
E
 
K
A
 
M
T
 
T
A
 
A
R
 
M
Y
 
Y

5odcI Heterodisulfide reductase / [nife]-hydrogenase complex from methanothermococcus thermolithotrophicus at 2.3 a resolution (see paper)
43% identity, 23% coverage: 26:119/403 of query aligns to 30:120/173 of 5odcI

query
sites
5odcI
S
 
S
L
 
L
G
 
K
Y
 
A
C
|
C
Y
|
Y
Q
|
Q
C
|
C
G
|
G
K
 
T
C
|
C
T
 
T
G
 
G
V
 
S
C
|
C
P
|
P
I
 
S
D
 
G
T
 
R
V
 
R
G
 
T
D
 
S
Y
|
Y
S
x
R
P
x
T
R
 
R
K
 
K
V
 
V
F
 
I
R
 
R
R
 
K
T
 
A
Q
 
L
L
 
L
G
 
G
A
 
M
S
 
D
-
 
D
L
 
V
L
 
L
D
 
D
S
 
S
P
 
D
D
|
D
L
 
I
W
 
W
L
 
K
C
|
C
T
|
T
T
|
T
C
|
C
R
x
Y
N
 
T
C
|
C
L
 
Y
R
 
E
V
 
R
C
|
C
P
 
P
K
 
R
E
 
D
V
|
V
N
 
K
M
 
V
I
 
T
K
 
E
I
 
I
M
 
I
P
 
K
A
 
T
V
 
I
R
 
R
E
 
N
K
 
L
A
 
A
V
 
A
L
 
Q
E
 
K
G
 
G
K
 
N
A
 
M
P
 
A
K
 
K
E
 
-
L
 
-
L
 
-
D
 
-
A
 
A
F
 
H
E
 
K
A
 
M
T
 
T
A
 
A
R
 
M
Y
 
Y

7bkbC Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from methanospirillum hungatei (hexameric, composite structure) (see paper)
33% identity, 35% coverage: 9:150/403 of query aligns to 27:164/189 of 7bkbC

query
sites
7bkbC
E
 
E
Y
 
F
D
 
T
L
 
Q
S
 
K
A
 
I
L
 
L
E
 
K
T
 
T
V
 
S
T
 
R
S
 
T
I
 
I
E
 
A
G
 
N
A
 
M
E
 
-
S
 
-
L
 
-
G
 
-
Y
 
-
C
|
C
Y
 
Y
Q
|
Q
C
|
C
G
|
G
K
 
T
C
|
C
T
 
T
G
 
G
V
 
S
C
|
C
P
|
P
I
 
S
D
 
A
T
 
P
V
 
R
G
 
S
D
 
S
Y
|
Y
S
 
R
P
x
I
R
 
R
K
 
L
V
 
F
F
 
M
R
 
R
R
 
R
T
 
C
Q
 
V
L
 
L
G
 
G
-
 
L
-
 
E
A
 
N
S
 
E
L
 
A
L
 
L
D
 
T
S
 
D
P
 
P
D
 
D
L
 
L
W
 
W
L
 
L
C
|
C
T
|
T
T
|
T
C
|
C
R
x
Y
N
 
S
C
|
C
L
 
T
R
 
D
V
 
R
C
|
C
P
|
P
K
 
R
E
 
D
V
 
I
N
 
A
M
 
P
I
x
T
K
 
D
I
 
V
M
 
I
P
 
M
A
 
A
V
 
M
R
 
R
E
 
N
K
 
L
A
 
A
V
 
F
L
 
K
E
 
R
G
 
D
K
 
I
A
 
V
P
 
P
K
 
K
E
 
N
L
 
F
L
 
L
D
 
Q
A
 
T
F
 
V
E
 
Q
A
 
L
T
 
I
A
 
Y
R
 
N
Y
 
S
G
 
G
N
 
H
P
 
G
L
 
V
G
 
P
E
 
N
S
 
N
P
 
D
R
 
V
K
 
N
R
 
R
A
 
A
D
 
A
W
 
R
T
 
T
K
 
K
Q
 
-
A
 
L
G
 
G
V
 
L
P
 
P
V
 
A
P
 
D
I
 
P
M
 
P
S
 
T
K
 
T
H
 
H
N
 
S
A
 
Y
P
 
P

Query Sequence

>WP_083780319.1 NCBI__GCF_000092905.1:WP_083780319.1
MFEPRPITEYDLSALETVTSIEGAESLGYCYQCGKCTGVCPIDTVGDYSPRKVFRRTQLG
ASLLDSPDLWLCTTCRNCLRVCPKEVNMIKIMPAVREKAVLEGKAPKELLDAFEATARYG
NPLGESPRKRADWTKQAGVPVPIMSKHNAPVDVLWFVECYPSYHPRGKDASIALARIFNA
LGVDFGILGHEEKCAGDSQRMAGERGLFEMLAEHNIKMLSKYRFNQIVVTDPHAYNAFLH
EYPALGGDFQTVHYTQYLASKIHELDLKIPIPKRVTFHDPCYLGRHNGEYDAPRKLLHAI
PGLELVEMGHCRETAYCCGGGGGGMWLDGFNRDHLSMRLSERRVLEAIEYGADILAVACP
FEVSRFEDAVKSTGNAGKLEVMDIAELLAQSAGLLESPVEVGQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory