Comparing WP_084056628.1 NCBI__GCF_900176285.1:WP_084056628.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
8j5qD Cryo-em structure of mycobacterium tuberculosis oppabcd in the pre- translocation state (see paper)
42% identity, 88% coverage: 10:627/702 of query aligns to 2:610/611 of 8j5qD
8j5tD Cryo-em structure of mycobacterium tuberculosis oppabcd in the catalytic intermediate state (see paper)
41% identity, 88% coverage: 10:625/702 of query aligns to 2:608/608 of 8j5tD
8j5sD Cryo-em structure of mycobacterium tuberculosis oppabcd in the pre- catalytic intermediate state (see paper)
41% identity, 88% coverage: 10:625/702 of query aligns to 2:608/608 of 8j5sD
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
36% identity, 46% coverage: 11:330/702 of query aligns to 4:320/326 of Q8RDH4
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
36% identity, 46% coverage: 11:330/702 of query aligns to 3:309/310 of 4fwiB
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
36% identity, 43% coverage: 10:309/702 of query aligns to 2:306/330 of P0AAH4
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
38% identity, 35% coverage: 389:632/702 of query aligns to 18:258/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
37% identity, 35% coverage: 389:632/702 of query aligns to 19:259/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
37% identity, 35% coverage: 389:632/702 of query aligns to 19:259/344 of 3tuiC
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
37% identity, 35% coverage: 389:632/702 of query aligns to 19:259/344 of 6cvlD
Sites not aligning to the query:
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
37% identity, 36% coverage: 10:265/702 of query aligns to 2:247/250 of 7z18I
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
37% identity, 36% coverage: 10:265/702 of query aligns to 2:247/253 of 7z15I
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
37% identity, 36% coverage: 10:265/702 of query aligns to 2:247/250 of 7z16I
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
35% identity, 33% coverage: 391:619/702 of query aligns to 17:239/241 of 4u00A
Sites not aligning to the query:
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
32% identity, 32% coverage: 395:621/702 of query aligns to 36:253/378 of P69874
Sites not aligning to the query:
1vciA Crystal structure of the atp-binding cassette of multisugar transporter from pyrococcus horikoshii ot3 complexed with atp (see paper)
31% identity, 39% coverage: 391:661/702 of query aligns to 21:263/353 of 1vciA
Sites not aligning to the query:
2d62A Crystal structure of multiple sugar binding transport atp- binding protein
33% identity, 33% coverage: 389:621/702 of query aligns to 19:248/375 of 2d62A
8hplC Lpqy-sugabc in state 1 (see paper)
33% identity, 33% coverage: 386:618/702 of query aligns to 10:234/384 of 8hplC
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
31% identity, 34% coverage: 396:632/702 of query aligns to 46:292/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
31% identity, 34% coverage: 396:632/702 of query aligns to 46:292/382 of 7aheC
Sites not aligning to the query:
>WP_084056628.1 NCBI__GCF_900176285.1:WP_084056628.1
MNKTNLSGDPVLEVEHLSISYKTRRGWIPAVRDVSFQIGAGETLGLVGESGCGKSTVAFS
LVNFLGSNGRIAGGSIRFEGSELVGRSRRELNRLRGNRISMVYQNPMSALNPTLRIGEQL
MEVLTCHQTVSKTEAWDRAVAMLRRVYMPDADQIMARYPHQLSGGQQQRVVIAMAMLNHP
ALLIMDEPTTALDVTVEAAVLDLVEDLKQEFQTSILFITHNLGVVARVSDRLCVMYAGEM
VEQGQVDTVFAHPAHPYTRGLLRCVPRLGSTKRALALHPIPGRVPAPLERPENACVFAPR
CAHAGEACLQEKPAWIRLPSGHGARCVMAENLAQKPLRLERRSASLKAPEAEETAEGSPL
LQMREVKVYYEQRKPSLKSLLGLGDKEYVRAVDGVSLRVPRGRTLGIVGESGCGKSSLLK
AVIGLERLSGGRLEFLGLDIAKTVRHRDFEVIREIQMVFQNPDATLNPSYSVGKQIARPI
RRFRTVPKGQVRSEVIRLLKAVRLGPEYYDRYPRQLSGGEKQRVGIARALASRPDLVLCD
EPVSALDVSVQAAVLNLLMEIQEELGTTLLFIAHDLSVVRYFTDDVAVMYLGQIMERGPA
EAIYAPPYHPYTEALLSAVPIPDPSARQKRIRLGGNVPSALNPPSGCRFHTRCPRCDLLG
EKSHLCREKMPPWRQVDEDHFIACHIPVEDLRGLDPVIHQVS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory