SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_084164601.1 NCBI__GCF_000576635.1:WP_084164601.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8y4wA Sialic acid bound form of tripartite atp-independent periplasmic (trap) transporter from fusobacterium nucleatum.
34% identity, 51% coverage: 73:190/233 of query aligns to 19:137/612 of 8y4wA

query
sites
8y4wA
M
 
M
L
 
F
V
 
V
T
 
I
V
 
L
G
 
V
A
 
M
Q
 
Q
I
 
I
V
 
F
M
 
S
R
 
R
Y
 
Q
A
 
I
L
 
F
N
 
N
A
 
S
P
 
P
L
 
L
V
 
I
W
 
W
S
 
S
E
 
E
E
 
E
L
 
L
A
 
S
R
 
R
F
 
L
T
 
I
M
 
F
V
 
V
W
 
Y
L
 
V
A
 
G
L
 
L
L
 
L
A
 
G
S
 
V
A
 
S
L
 
M
A
 
G
M
 
I
R
 
R
R
 
S
A
 
Q
Q
 
Q
H
 
H
I
 
I
A
 
M
M
 
I
T
 
D
G
 
F
L
 
L
Y
 
Y
-
 
A
T
 
K
L
 
F
P
 
P
P
 
K
S
 
S
V
 
M
E
 
Q
P
 
K
I
 
I
L
 
I
K
 
F
A
 
T
L
 
I
T
 
I
A
 
Q
L
 
I
A
 
L
T
 
I
I
 
L
L
 
A
I
 
C
L
 
L
G
 
I
V
 
F
L
 
F
T
 
L
Y
 
Y
H
 
F
G
 
G
W
 
Y
E
 
D
L
 
L
A
 
F
E
 
I
R
 
K
T
 
K
M
 
E
R
 
E
Q
 
I
R
 
E
S
 
I
P
 
V
A
 
S
L
 
L
G
 
G
L
 
I
P
 
S
M
 
M
G
 
K
Y
 
W
M
 
M
Y
 
Y
A
 
L
A
 
A
I
 
L
P
 
P
I
 
L
A
 
I
T
 
T
F
 
L
L
 
L
M
 
M
M
 
L
I
 
V

Sites not aligning to the query:

Query Sequence

>WP_084164601.1 NCBI__GCF_000576635.1:WP_084164601.1
MSTRSSRTSRGSSISTRASARSAPASNGPAAGPGRPGPALHRRGLSMLPFLKSCDTWFHR
CLAGLCALLVAVMLVTVGAQIVMRYALNAPLVWSEELARFTMVWLALLASALAMRRAQHI
AMTGLYTLPPSVEPILKALTALATILILGVLTYHGWELAERTMRQRSPALGLPMGYMYAA
IPIATFLMMIGHALALITRTEPPLVEPSPDIAGDQPGTLSSAYPSAHYNKEPI

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory