Comparing WP_084260337.1 NCBI__GCF_000621325.1:WP_084260337.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3ip9A Structure of atu2422-gaba receptor in complex with gaba (see paper)
36% identity, 90% coverage: 27:364/375 of query aligns to 3:338/348 of 3ip9A
3ip7A Structure of atu2422-gaba receptor in complex with valine (see paper)
36% identity, 90% coverage: 27:364/375 of query aligns to 3:338/348 of 3ip7A
3ip6A Structure of atu2422-gaba receptor in complex with proline (see paper)
36% identity, 90% coverage: 27:364/375 of query aligns to 3:338/348 of 3ip6A
3ip5A Structure of atu2422-gaba receptor in complex with alanine (see paper)
36% identity, 90% coverage: 27:364/375 of query aligns to 3:338/348 of 3ip5A
3ipcA Structure of atu2422-gaba f77a mutant receptor in complex with leucine (see paper)
36% identity, 90% coverage: 27:364/375 of query aligns to 3:338/348 of 3ipcA
1uskA L-leucine-binding protein with leucine bound (see paper)
31% identity, 90% coverage: 27:363/375 of query aligns to 3:338/345 of 1uskA
1usiA L-leucine-binding protein with phenylalanine bound (see paper)
31% identity, 90% coverage: 27:363/375 of query aligns to 3:338/345 of 1usiA
4n0qB Crystal structure of an abc transporter, substrate-binding protein from brucella melitensis 16m in complex with l-leucine using a crystal grown in a crystal former (microlytic)
31% identity, 91% coverage: 27:369/375 of query aligns to 3:345/345 of 4n0qB
1z18A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound valine (see paper)
30% identity, 87% coverage: 27:351/375 of query aligns to 3:324/344 of 1z18A
1z17A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound ligand isoleucine (see paper)
30% identity, 87% coverage: 27:351/375 of query aligns to 3:324/344 of 1z17A
1z16A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound leucine (see paper)
30% identity, 87% coverage: 27:351/375 of query aligns to 3:324/344 of 1z16A
4gnrA 1.0 angstrom resolution crystal structure of the branched-chain amino acid transporter substrate binding protein livj from streptococcus pneumoniae str. Canada mdr_19a in complex with isoleucine
33% identity, 86% coverage: 26:347/375 of query aligns to 2:322/348 of 4gnrA
3td9A Crystal structure of a leucine binding protein livk (tm1135) from thermotoga maritima msb8 at 1.90 a resolution
31% identity, 87% coverage: 26:350/375 of query aligns to 1:324/350 of 3td9A
4q6wA Crystal structure of periplasmic binding protein type 1 from bordetella pertussis tohama i complexed with 3-hydroxy benzoic acid
29% identity, 93% coverage: 26:372/375 of query aligns to 3:375/376 of 4q6wA
4mlcA Abc transporter substrate-binding protein fromdesulfitobacterium hafniense
28% identity, 86% coverage: 49:369/375 of query aligns to 21:336/336 of 4mlcA
4q6bA Crystal structure of abc transporter substrate-binding protein fromdesulfitobacterium hafniense complex with leu
28% identity, 86% coverage: 49:369/375 of query aligns to 21:335/335 of 4q6bA
4dqdA The crystal structure of a transporter in complex with 3-phenylpyruvic acid (see paper)
29% identity, 65% coverage: 27:270/375 of query aligns to 3:241/361 of 4dqdA
Sites not aligning to the query:
3sg0A The crystal structure of an extracellular ligand-binding receptor from rhodopseudomonas palustris haa2 (see paper)
29% identity, 65% coverage: 27:270/375 of query aligns to 4:242/361 of 3sg0A
5ereA Extracellular ligand binding receptor from desulfohalobium retbaense dsm5692
25% identity, 92% coverage: 29:374/375 of query aligns to 4:326/540 of 5ereA
Sites not aligning to the query:
4rdcA The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with proline
23% identity, 82% coverage: 26:331/375 of query aligns to 2:311/364 of 4rdcA
Sites not aligning to the query:
>WP_084260337.1 NCBI__GCF_000621325.1:WP_084260337.1
MAVGLGVSACGEKKTEAAAGENGAVTVKIGQSSPLTGPQAHIGKDNDNGVRLAIDEINAS
KPVIDGKPVTFEVMSEDDQADPKTATIVAQRMIDEGIVGVIGHLNSGATIPASKVYSDNN
IPQISPSATAIKYTDQGFKTAFRVMTNDAQQGKVLGAYAAKLGKKVAIIDDQTAYGQGLA
AEVEKAAKAAGAEVVAVEHTNDKASDFTAILTSIKGKAPDVVFFGGMDPQAAPIAKQMHQ
LGMTAQLLGGDGMQTPKFIELAAADAEGAIASIPGLPIDKMPKGADFKQKFEAKYGQIQL
YSPYAYDAAYVMVDAMKRANSTDPAKYLPELGKTSFEGVTGKISFDAKGDLTSGPITLYK
VQAGQWTTLETILPQ
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory