SitesBLAST
Comparing WP_084275803.1 NCBI__GCF_900176045.1:WP_084275803.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
8y1jA Structure of the pyridoxal 5'-phosphate-dependent (plp) threonine deaminase ilva1 from pseudomonas aeruginosa pao1 (see paper)
37% identity, 96% coverage: 13:397/403 of query aligns to 12:393/502 of 8y1jA
Sites not aligning to the query:
1tdjA Threonine deaminase (biosynthetic) from e. Coli (see paper)
37% identity, 94% coverage: 18:397/403 of query aligns to 25:400/494 of 1tdjA
- active site: K58 (= K51), A83 (= A76), E209 (≠ T202), S213 (≠ A206), C215 (≠ A208), G237 (= G230), L310 (= L302), S311 (= S303)
- binding pyridoxal-5'-phosphate: F57 (= F50), K58 (= K51), N85 (= N78), G184 (= G177), G185 (= G178), G186 (= G179), G187 (= G180), G237 (= G230), E282 (= E275), S311 (= S303), G312 (= G304)
P04968 L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 from Escherichia coli (strain K12) (see paper)
37% identity, 94% coverage: 18:397/403 of query aligns to 29:404/514 of P04968
- K62 (= K51) modified: N6-(pyridoxal phosphate)lysine
- N89 (= N78) binding pyridoxal 5'-phosphate
- GGGGL 188:192 (= GGGGL 177:181) binding pyridoxal 5'-phosphate
- S315 (= S303) binding pyridoxal 5'-phosphate
2gn2A Crystal structure of tetrameric biodegradative threonine deaminase (tdcb) from salmonella typhimurium in complex with cmp at 2.5a resolution (hexagonal form) (see paper)
44% identity, 78% coverage: 2:315/403 of query aligns to 7:321/326 of 2gn2A
- active site: K56 (= K51), A81 (= A76), Q207 (≠ T202), V211 (≠ A206), G213 (≠ A208), G235 (= G230), I308 (≠ L302), S309 (= S303)
- binding cytidine-5'-monophosphate: R51 (≠ V46), T52 (= T47), G53 (= G48), A114 (≠ G109), D117 (≠ S112), Y118 (= Y113), N312 (= N306)
Q7XSN8 Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa subsp. japonica (Rice) (see paper)
37% identity, 77% coverage: 4:312/403 of query aligns to 21:332/339 of Q7XSN8
- E219 (≠ T202) mutation to A: Reduces catalytic activity and abolishes the regulatory effect of Mg(2+) addition; when associated with A-225.
- D225 (≠ A208) mutation to A: Reduces catalytic activity and abolishes the regulatory effect of Mg(2+) addition; when associated with A-219.
A4F2N8 L-threo-3-hydroxyaspartate ammonia-lyase; L-threo-3-hydroxyaspartate dehydratase; L-THA DH; EC 4.3.1.16 from Pseudomonas sp. (see paper)
37% identity, 76% coverage: 5:309/403 of query aligns to 7:310/319 of A4F2N8
- K53 (= K51) mutation to A: Loss of enzymatic activity.
Q9GZT4 Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Homo sapiens (Human) (see 4 papers)
36% identity, 77% coverage: 1:310/403 of query aligns to 6:320/340 of Q9GZT4
- E13 (≠ Q8) binding Mg(2+)
- S31 (≠ A26) binding ATP
- S32 (≠ P27) binding ATP
- I33 (= I28) binding ATP
- K51 (≠ V46) binding ATP
- T52 (= T47) binding ATP
- K56 (= K51) modified: N6-(pyridoxal phosphate)lysine
- P69 (vs. gap) binding Ca(2+)
- T81 (≠ A73) binding Ca(2+)
- N86 (= N78) binding pyridoxal 5'-phosphate
- Q89 (= Q81) binding ATP
- Y121 (= Y113) binding ATP
- D178 (= D170) binding Mg(2+)
- G185 (= G177) binding pyridoxal 5'-phosphate
- G186 (= G178) binding pyridoxal 5'-phosphate
- G187 (= G179) binding pyridoxal 5'-phosphate
- G188 (= G180) binding pyridoxal 5'-phosphate
- M189 (≠ L181) binding pyridoxal 5'-phosphate
- E210 (≠ T202) binding Ca(2+); binding Mg(2+); binding Mn(2+)
- A214 (= A206) binding Ca(2+); binding Mg(2+); binding Mn(2+)
- D216 (≠ A208) binding Ca(2+); binding Mg(2+); binding Mn(2+)
- N247 (≠ V239) binding Ca(2+); binding Mg(2+)
- K279 (= K271) binding ATP
- S313 (= S303) binding pyridoxal 5'-phosphate
- N316 (= N306) binding ATP
7nbgAAA structure of human serine racemase in complex with DSiP fragment Z52314092, XChem fragment screen (see paper)
36% identity, 77% coverage: 2:310/403 of query aligns to 4:317/322 of 7nbgAAA
- active site: K53 (= K51), S81 (≠ A76), E207 (≠ T202), A211 (= A206), D213 (≠ A208), G236 (= G230), L309 (= L302), S310 (= S303)
- binding calcium ion: E207 (≠ T202), A211 (= A206), D213 (≠ A208)
- binding pyridoxal-5'-phosphate: F52 (= F50), K53 (= K51), N83 (= N78), G182 (= G177), G183 (= G178), G184 (= G179), G185 (= G180), M186 (≠ L181), G236 (= G230), V237 (≠ I231), T282 (≠ A277), S310 (= S303), G311 (= G304)
- binding ~{N}-[2-(2-methylphenyl)ethyl]ethanamide: S81 (≠ A76), G85 (≠ A80), Q86 (= Q81), I101 (= I96), K111 (= K106), I115 (≠ V110), Y118 (= Y113)
7nbfAAA structure of human serine racemase in complex with DSiP fragment Z126932614, XChem fragment screen (see paper)
36% identity, 77% coverage: 2:310/403 of query aligns to 4:317/323 of 7nbfAAA
- active site: K53 (= K51), S81 (≠ A76), E207 (≠ T202), A211 (= A206), D213 (≠ A208), G236 (= G230), L309 (= L302), S310 (= S303)
- binding calcium ion: E207 (≠ T202), A211 (= A206), D213 (≠ A208)
- binding magnesium ion: N244 (≠ V239)
- binding pyridoxal-5'-phosphate: F52 (= F50), K53 (= K51), N83 (= N78), G182 (= G177), G183 (= G178), G184 (= G179), G185 (= G180), M186 (≠ L181), G236 (= G230), V237 (≠ I231), T282 (≠ A277), S310 (= S303), G311 (= G304)
- binding 2-[(methylsulfonyl)methyl]-1H-benzimidazole: H21 (≠ S19), L22 (≠ K20), T23 (= T21), P24 (= P22), L26 (≠ A24), T27 (≠ Y25), F46 (≠ L44)
Sites not aligning to the query:
7nbdAAA structure of human serine racemase in complex with DSiP fragment Z235449082, XChem fragment screen (see paper)
36% identity, 77% coverage: 2:310/403 of query aligns to 4:317/323 of 7nbdAAA
- active site: K53 (= K51), S81 (≠ A76), E207 (≠ T202), A211 (= A206), D213 (≠ A208), G236 (= G230), L309 (= L302), S310 (= S303)
- binding calcium ion: E207 (≠ T202), A211 (= A206), D213 (≠ A208)
- binding [4-(1H-benzimidazol-1-yl)phenyl]methanol: W272 (≠ L267), L278 (≠ V273), V314 (≠ I307), L316 (≠ V309)
- binding magnesium ion: N244 (≠ V239)
- binding pyridoxal-5'-phosphate: F52 (= F50), K53 (= K51), N83 (= N78), G182 (= G177), G183 (= G178), G184 (= G179), G185 (= G180), M186 (≠ L181), G236 (= G230), V237 (≠ I231), E280 (= E275), T282 (≠ A277), S310 (= S303), G311 (= G304)
Sites not aligning to the query:
7nbcCCC structure of human serine racemase in complex with DSiP fragment Z2856434779, XChem fragment screen (see paper)
36% identity, 77% coverage: 2:310/403 of query aligns to 4:317/323 of 7nbcCCC
- active site: K53 (= K51), S81 (≠ A76), E207 (≠ T202), A211 (= A206), D213 (≠ A208), G236 (= G230), L309 (= L302), S310 (= S303)
- binding biphenyl-4-ylacetic acid: T78 (≠ A73), H79 (≠ A74), H84 (= H79), V148 (= V143), H149 (= H144), P150 (= P145)
- binding calcium ion: E207 (≠ T202), A211 (= A206), D213 (≠ A208)
- binding pyridoxal-5'-phosphate: F52 (= F50), K53 (= K51), N83 (= N78), G182 (= G177), G183 (= G178), G184 (= G179), G185 (= G180), M186 (≠ L181), G236 (= G230), V237 (≠ I231), T282 (≠ A277), S310 (= S303), G311 (= G304)
7nbcAAA structure of human serine racemase in complex with DSiP fragment Z2856434779, XChem fragment screen (see paper)
36% identity, 77% coverage: 2:310/403 of query aligns to 4:317/323 of 7nbcAAA
- active site: K53 (= K51), S81 (≠ A76), E207 (≠ T202), A211 (= A206), D213 (≠ A208), G236 (= G230), L309 (= L302), S310 (= S303)
- binding calcium ion: E207 (≠ T202), A211 (= A206), D213 (≠ A208)
- binding magnesium ion: N244 (≠ V239)
- binding pyridoxal-5'-phosphate: F52 (= F50), K53 (= K51), N83 (= N78), G182 (= G177), G183 (= G178), G184 (= G179), G185 (= G180), M186 (≠ L181), G236 (= G230), V237 (≠ I231), T282 (≠ A277), S310 (= S303), G311 (= G304)
Sites not aligning to the query:
7nbhAAA structure of human serine racemase in complex with DSiP fragment Z26781964, XChem fragment screen (see paper)
36% identity, 77% coverage: 2:310/403 of query aligns to 4:317/320 of 7nbhAAA