Comparing WP_084276606.1 NCBI__GCF_900176045.1:WP_084276606.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 18 hits to proteins with known functional sites (download)
3n2eA Crystal structure of helicobactor pylori shikimate kinase in complex with nsc162535 (see paper)
35% identity, 88% coverage: 1:141/160 of query aligns to 10:145/168 of 3n2eA
Sites not aligning to the query:
3mufA Shikimate kinase from helicobacter pylori in complex with shikimate-3- phosphate and adp (see paper)
35% identity, 88% coverage: 1:141/160 of query aligns to 9:144/160 of 3mufA
Sites not aligning to the query:
1zuiA Structural basis for shikimate-binding specificity of helicobacter pylori shikimate kinase (see paper)
34% identity, 88% coverage: 1:141/160 of query aligns to 9:142/158 of 1zuiA
1u8aA Crystal structure of mycobacterium tuberculosis shikimate kinase in complex with shikimate and adp at 2.15 angstrom resolution (see paper)
27% identity, 98% coverage: 2:158/160 of query aligns to 11:163/163 of 1u8aA
2iyvA Shikimate kinase from mycobacterium tuberculosis in complex with adp, open lid (conf. B) (see paper)
26% identity, 99% coverage: 2:160/160 of query aligns to 11:167/179 of 2iyvA
2iywA Shikimate kinase from mycobacterium tuberculosis in complex with mgatp, open lid (conf. B) (see paper)
26% identity, 99% coverage: 2:160/160 of query aligns to 11:167/178 of 2iywA
4bqsA Crystal structure of mycobacterium tuberculosis shikimate kinase in complex with adp and a shikimic acid derivative. (see paper)
26% identity, 99% coverage: 2:160/160 of query aligns to 11:167/169 of 4bqsA
Sites not aligning to the query:
2iyyA Shikimate kinase from mycobacterium tuberculosis in complex with shikimate-3-phosphate and so4 (see paper)
26% identity, 99% coverage: 2:160/160 of query aligns to 11:167/169 of 2iyyA
1zyuA Crystal structure of mycobacterium tuberculosis shikimate kinase in complex with shikimate and amppcp at 2.85 angstrom resolution (see paper)
26% identity, 99% coverage: 2:160/160 of query aligns to 11:167/168 of 1zyuA
Sites not aligning to the query:
3bafA Crystal structure of shikimate kinase from mycobacterium tuberculosis in complex with amp-pnp
27% identity, 98% coverage: 2:158/160 of query aligns to 11:165/165 of 3bafA
Sites not aligning to the query:
2dfnA Structure of shikimate kinase from mycobacterium tuberculosis complexed with adp and shikimate at 1.9 angstrons of resolution (see paper)
27% identity, 98% coverage: 2:158/160 of query aligns to 11:165/165 of 2dfnA
Sites not aligning to the query:
1we2A Crystal structure of shikimate kinase from mycobacterium tuberculosis in complex with mgadp and shikimic acid (see paper)
27% identity, 98% coverage: 2:158/160 of query aligns to 11:165/165 of 1we2A
Sites not aligning to the query:
P10880 Shikimate kinase 2; SK 2; Shikimate kinase II; SKII; EC 2.7.1.71 from Dickeya chrysanthemi (Pectobacterium chrysanthemi) (Erwinia chrysanthemi) (see paper)
24% identity, 88% coverage: 2:141/160 of query aligns to 12:152/173 of P10880
Sites not aligning to the query:
4y0aA Shikimate kinase from acinetobacter baumannii in complex with shikimate (see paper)
30% identity, 99% coverage: 1:158/160 of query aligns to 17:173/179 of 4y0aA
1e6cA K15m mutant of shikimate kinase from erwinia chrysanthemi (see paper)
23% identity, 88% coverage: 2:141/160 of query aligns to 12:152/170 of 1e6cA
Sites not aligning to the query:
1shkA The three-dimensional structure of shikimate kinase from erwinia chrysanthemi (see paper)
24% identity, 69% coverage: 2:112/160 of query aligns to 12:124/158 of 1shkA
Sites not aligning to the query:
2shkB The three-dimensional structure of shikimate kinase from erwinia chrysanthemi complexed with adp (see paper)
23% identity, 88% coverage: 2:141/160 of query aligns to 12:142/162 of 2shkB
Sites not aligning to the query:
7tbvA Crystal structure of the shikimate kinase + 3-dehydroquinate dehydratase + 3-dehydroshikimate dehydrogenase domains of aro1 from candida albicans (see paper)
32% identity, 58% coverage: 2:93/160 of query aligns to 13:113/682 of 7tbvA
Sites not aligning to the query:
>WP_084276606.1 NCBI__GCF_900176045.1:WP_084276606.1
MGVGKGTLARAMAGKTDIYAIDTDDLIESLTNMKIKKIFKKKGEEYFRKLEQKTADWLAS
SVQNSIISTGGGFYKVKNLKSIGTIVYLQADFDWIYERITKSKNAKKKIKKRPLFKSYKD
AKKLYEQRVPEYKSVADIIINVEDKNIDELIEEITSKIKF
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory