Comparing WP_084456648.1 NCBI__GCF_000429965.1:WP_084456648.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
8j5qD Cryo-em structure of mycobacterium tuberculosis oppabcd in the pre- translocation state (see paper)
46% identity, 73% coverage: 30:269/330 of query aligns to 373:610/611 of 8j5qD
Sites not aligning to the query:
8j5tD Cryo-em structure of mycobacterium tuberculosis oppabcd in the catalytic intermediate state (see paper)
45% identity, 72% coverage: 30:266/330 of query aligns to 373:607/608 of 8j5tD
Sites not aligning to the query:
8j5sD Cryo-em structure of mycobacterium tuberculosis oppabcd in the pre- catalytic intermediate state (see paper)
45% identity, 72% coverage: 30:266/330 of query aligns to 373:607/608 of 8j5sD
Sites not aligning to the query:
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
35% identity, 95% coverage: 12:325/330 of query aligns to 3:307/310 of 4fwiB
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
34% identity, 95% coverage: 12:325/330 of query aligns to 4:318/326 of Q8RDH4
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
34% identity, 96% coverage: 12:328/330 of query aligns to 3:326/330 of P0AAH4
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
38% identity, 76% coverage: 12:263/330 of query aligns to 1:246/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
38% identity, 76% coverage: 12:263/330 of query aligns to 2:247/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
38% identity, 76% coverage: 12:263/330 of query aligns to 2:247/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
38% identity, 76% coverage: 12:263/330 of query aligns to 2:247/344 of 3tuiC
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
35% identity, 70% coverage: 34:263/330 of query aligns to 20:249/253 of 7z15I
Sites not aligning to the query:
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
35% identity, 70% coverage: 34:263/330 of query aligns to 20:249/250 of 7z18I
Sites not aligning to the query:
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
35% identity, 70% coverage: 34:263/330 of query aligns to 20:249/250 of 7z16I
Sites not aligning to the query:
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
34% identity, 67% coverage: 32:253/330 of query aligns to 41:258/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
34% identity, 67% coverage: 32:253/330 of query aligns to 41:258/382 of 7aheC
Sites not aligning to the query:
7ahdC Opua (e190q) occluded (see paper)
33% identity, 67% coverage: 32:253/330 of query aligns to 41:258/260 of 7ahdC
Sites not aligning to the query:
Q5M243 Energy-coupling factor transporter ATP-binding protein EcfA1; ECF transporter A component EcfA1; EC 7.-.-.- from Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) (see paper)
35% identity, 73% coverage: 12:251/330 of query aligns to 1:230/276 of Q5M243
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
31% identity, 75% coverage: 15:262/330 of query aligns to 4:240/240 of 4ymuJ
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
32% identity, 76% coverage: 12:263/330 of query aligns to 2:241/241 of 4u00A
3c4jA Abc protein artp in complex with atp-gamma-s
30% identity, 76% coverage: 12:262/330 of query aligns to 3:242/242 of 3c4jA
>WP_084456648.1 NCBI__GCF_000429965.1:WP_084456648.1
MKTYQSSKTGAVLEVRDIQVSFNIGRKQTIHAVSEVSFKINREETLGLVGESGCGKSSLA
RAIMQLPPPISGQVFVDGYDLSAMDAMALRGFRSRIQMVFQDPASSLNPGRRVGRSIAEP
LRIQGVKDKTERISRVRSMMAAVGLDPEQYEDLFPSQLSGGQCQRVSIARALMTRPDMLI
CDESVSALDVSVQAQILNLLNQIKVDFGLAMLFISHDLAVVKRVSDRVAVMYKGTICELA
PVQELYSRPTHPYTVVLLNAVLQPLPGKRRLADIKVPNRNELSSSTASPCGCRFHPRCSL
MKRLCAEQAPRLSEIENGHFVACHFPYSKT
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory