Comparing WP_085126658.1 NCBI__GCF_900177295.1:WP_085126658.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
40% identity, 91% coverage: 8:243/260 of query aligns to 4:238/501 of P04983
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
33% identity, 80% coverage: 19:225/260 of query aligns to 16:220/353 of 1oxvD
Sites not aligning to the query:
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
33% identity, 80% coverage: 19:225/260 of query aligns to 16:220/353 of 1oxvA
Sites not aligning to the query:
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
33% identity, 80% coverage: 19:225/260 of query aligns to 16:220/353 of 1oxuA
Sites not aligning to the query:
Q97UY8 Glucose import ATP-binding protein GlcV; EC 7.5.2.- from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see paper)
33% identity, 80% coverage: 19:225/260 of query aligns to 16:220/353 of Q97UY8
5x40A Structure of a cbio dimer bound with amppcp (see paper)
33% identity, 93% coverage: 6:248/260 of query aligns to 2:242/280 of 5x40A
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
29% identity, 84% coverage: 18:236/260 of query aligns to 14:240/253 of 1g9xB
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
29% identity, 84% coverage: 18:236/260 of query aligns to 14:240/254 of 1g6hA
P07821 Iron(3+)-hydroxamate import ATP-binding protein FhuC; Ferric hydroxamate uptake protein C; Ferrichrome transport ATP-binding protein FhuC; Iron(III)-hydroxamate import ATP-binding protein FhuC; EC 7.2.2.16 from Escherichia coli (strain K12) (see 2 papers)
33% identity, 94% coverage: 11:254/260 of query aligns to 14:255/265 of P07821
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
30% identity, 80% coverage: 18:225/260 of query aligns to 11:215/240 of 4ymuJ
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
29% identity, 80% coverage: 18:225/260 of query aligns to 14:215/285 of 4yerA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
28% identity, 84% coverage: 7:225/260 of query aligns to 1:215/241 of 4u00A
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
31% identity, 84% coverage: 6:224/260 of query aligns to 15:226/378 of P69874
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
34% identity, 82% coverage: 21:232/260 of query aligns to 18:227/343 of P30750
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
27% identity, 84% coverage: 8:225/260 of query aligns to 3:217/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
27% identity, 84% coverage: 8:225/260 of query aligns to 3:217/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
27% identity, 84% coverage: 8:225/260 of query aligns to 3:217/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
27% identity, 84% coverage: 8:225/260 of query aligns to 3:217/242 of 2oljA
8y5iA Cryo-em structure of e.Coli spermidine transporter potd-potabc in translocation intermidiate state (see paper)
30% identity, 84% coverage: 7:224/260 of query aligns to 1:211/358 of 8y5iA
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
33% identity, 82% coverage: 21:232/260 of query aligns to 19:228/344 of 3tuzC
Sites not aligning to the query:
>WP_085126658.1 NCBI__GCF_900177295.1:WP_085126658.1
MAEGPTPLVEMRGIEVAFGGVKAVDGVSLDLYAGEVVGLLGHNGAGKSTLIKVLSGAVPA
RAGEILIDGAAVRIASPQDARRHRIETIYQTLALADNLNAAANLFLGRELTTPTGLLDEE
RMEAETRRILARLNRNFDRFSTPVRSLSGGQRQSIAIARAVHFDARILIMDEPTAALGVQ
ETAMVAELVRQLKAEGIGIFLISHDIHDVFDLSDRVTVLKNGRLVGTRRVAETTQDEVLA
MIIQGEPPSSSRHPREGGDP
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory