SitesBLAST
Comparing WP_085635152.1 NCBI__GCF_002115805.1:WP_085635152.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
6rl5G The first crystal structure of the daba aminotransferase ectb in the ectoine biosynthesis pathway of the model organism chromohalobacter salexigens dsm 3034 (see paper)
50% identity, 96% coverage: 8:421/430 of query aligns to 1:419/422 of 6rl5G
- active site: S16 (≠ C23), F137 (= F144), D237 (= D243), K266 (= K272)
- binding pyridoxal-5'-phosphate: G110 (= G117), T111 (≠ A118), F137 (= F144), H138 (= H145), D237 (= D243), I239 (= I245), Q240 (= Q246), K266 (= K272), G294 (= G300), T295 (= T301)
P22256 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 from Escherichia coli (strain K12) (see 2 papers)
32% identity, 95% coverage: 5:413/430 of query aligns to 1:417/426 of P22256
- I50 (≠ C53) mutation to Q: 3-fold decrease in catalytic activity and 12-fold decrease in affinity for GABA.
- GS 111:112 (≠ GA 117:118) binding pyridoxal 5'-phosphate
- E211 (= E215) mutation to S: 100-fold decrease in catalytic activity and 15-fold decrease in affinity for GABA.
- V241 (≠ I245) mutation to A: 25-fold decrease in catalytic activity and 5-fold decrease in affinity for GABA.
- Q242 (= Q246) binding pyridoxal 5'-phosphate
- K268 (= K272) modified: N6-(pyridoxal phosphate)lysine
- T297 (= T301) binding pyridoxal 5'-phosphate
1sffA Structure of gamma-aminobutyrate aminotransferase complex with aminooxyacetate (see paper)
32% identity, 94% coverage: 11:413/430 of query aligns to 6:416/425 of 1sffA
- active site: V18 (≠ Y22), Y137 (≠ F144), E205 (= E210), D238 (= D243), Q241 (= Q246), K267 (= K272), T296 (= T301), R397 (≠ K394)
- binding 4'-deoxy-4'-acetylyamino-pyridoxal-5'-phosphate: Q78 (≠ H85), G110 (= G117), S111 (≠ A118), Y137 (≠ F144), H138 (= H145), R140 (≠ V147), E205 (= E210), D238 (= D243), V240 (≠ I245), Q241 (= Q246), K267 (= K272), T296 (= T301)
- binding sulfate ion: N152 (≠ G158), Y393 (≠ D390)
1sf2A Structure of e. Coli gamma-aminobutyrate aminotransferase (see paper)
32% identity, 94% coverage: 11:413/430 of query aligns to 6:416/425 of 1sf2A
- active site: V18 (≠ Y22), Y137 (≠ F144), E205 (= E210), D238 (= D243), Q241 (= Q246), K267 (= K272), T296 (= T301), R397 (≠ K394)
- binding pyridoxal-5'-phosphate: G110 (= G117), S111 (≠ A118), Y137 (≠ F144), H138 (= H145), E205 (= E210), D238 (= D243), V240 (≠ I245), Q241 (= Q246), K267 (= K272)
- binding sulfate ion: N152 (≠ G158), Y393 (≠ D390)
1szkA The structure of gamma-aminobutyrate aminotransferase mutant: e211s (see paper)
32% identity, 94% coverage: 11:413/430 of query aligns to 6:416/425 of 1szkA
- active site: V18 (≠ Y22), Y137 (≠ F144), E205 (= E210), D238 (= D243), Q241 (= Q246), K267 (= K272), T296 (= T301), R397 (≠ K394)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G110 (= G117), S111 (≠ A118), Y137 (≠ F144), H138 (= H145), E205 (= E210), D238 (= D243), V240 (≠ I245), Q241 (= Q246), K267 (= K272)
2eh6A Crystal structure of acetylornithine aminotransferase from aquifex aeolicus vf5
28% identity, 91% coverage: 21:413/430 of query aligns to 6:371/375 of 2eh6A
- active site: F127 (= F144), E179 (= E210), D212 (= D243), Q215 (= Q246), K241 (= K272), T270 (= T301), R352 (≠ K394)
- binding pyridoxal-5'-phosphate: G95 (= G117), T96 (≠ A118), F127 (= F144), H128 (= H145), E179 (= E210), D212 (= D243), V214 (≠ I245), K241 (= K272)
O66442 Acetylornithine aminotransferase; ACOAT; EC 2.6.1.11 from Aquifex aeolicus (strain VF5)
28% identity, 91% coverage: 21:413/430 of query aligns to 7:372/376 of O66442
- GT 96:97 (≠ GA 117:118) binding pyridoxal 5'-phosphate
- K242 (= K272) modified: N6-(pyridoxal phosphate)lysine
- T271 (= T301) binding pyridoxal 5'-phosphate
P50457 4-aminobutyrate aminotransferase PuuE; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; EC 2.6.1.19 from Escherichia coli (strain K12) (see paper)
33% identity, 95% coverage: 13:419/430 of query aligns to 8:421/421 of P50457
- K267 (= K272) mutation to A: No GABA-AT activity.
8ht4B Crystal structure of acetylornithine aminotransferase complex with plp from corynebacterium glutamicum (see paper)
33% identity, 87% coverage: 27:400/430 of query aligns to 18:372/390 of 8ht4B
2ordA Crystal structure of acetylornithine aminotransferase (ec 2.6.1.11) (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution
30% identity, 91% coverage: 21:411/430 of query aligns to 14:391/393 of 2ordA
- active site: F134 (= F144), E186 (= E210), D219 (= D243), Q222 (= Q246), K248 (= K272), T276 (= T301), R367 (≠ K394)
- binding pyridoxal-5'-phosphate: G102 (= G117), T103 (≠ A118), F134 (= F144), H135 (= H145), E186 (= E210), D219 (= D243), V221 (≠ I245), Q222 (= Q246), K248 (= K272)
Q9X2A5 Acetylornithine aminotransferase; ACOAT; EC 2.6.1.11 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
30% identity, 91% coverage: 21:411/430 of query aligns to 6:383/385 of Q9X2A5
- GT 94:95 (≠ GA 117:118) binding pyridoxal 5'-phosphate
- T268 (= T301) binding pyridoxal 5'-phosphate
A0A0J9X1Q5 Aminotransferase PigE; EC 2.6.1.- from Serratia sp. (strain FS14) (see paper)
31% identity, 78% coverage: 29:362/430 of query aligns to 418:741/853 of A0A0J9X1Q5
- GT 503:504 (≠ GA 117:118) binding pyridoxal 5'-phosphate
- K645 (= K272) modified: N6-(pyridoxal phosphate)lysine
- T680 (= T301) binding pyridoxal 5'-phosphate
4ppmA Crystal structure of pige: a transaminase involved in the biosynthesis of 2-methyl-3-n-amyl-pyrrole (map) from serratia sp. Fs14 (see paper)
31% identity, 78% coverage: 29:362/430 of query aligns to 47:370/464 of 4ppmA
- active site: Y159 (≠ F144), E212 (= E210), D245 (= D243), Q248 (= Q246), K274 (= K272), T309 (= T301)
- binding magnesium ion: A351 (= A344), Y354 (≠ V347), V357 (≠ D349)
- binding pyridoxal-5'-phosphate: G132 (= G117), T133 (≠ A118), Y159 (≠ F144), H160 (= H145), D245 (= D243), V247 (≠ I245), K274 (= K272)
Sites not aligning to the query:
P73133 Acetylornithine aminotransferase; ACOAT; EC 2.6.1.11 from Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) (see paper)
29% identity, 92% coverage: 21:416/430 of query aligns to 38:424/429 of P73133
- Y39 (= Y22) mutation to F: Retains 7.4% of N-acetylornithine aminotransferase wild-type activity.
- S125 (≠ T116) mutation to A: Retains 14% of N-acetylornithine aminotransferase wild-type activity.
- G126 (= G117) mutation to A: Loss of N-acetylornithine aminotransferase activity.
- A127 (= A118) mutation to S: Retains 9.1% of N-acetylornithine aminotransferase wild-type activity.
- R163 (≠ V147) mutation to A: 4100-fold increase in KM for acetylornithine, but does not affect KM for 2-oxoglutarate. Retains 9.5% of N-acetylornithine aminotransferase wild-type activity.
- E223 (= E215) mutation to A: 65-fold increase in KM for acetylornithine, but does not affect KM for 2-oxoglutarate. Retains 50% of N-acetylornithine aminotransferase wild-type activity.; mutation to S: 73-fold increase in KM for acetylornithine, but does not affect KM for 2-oxoglutarate. Shows 160% of N-acetylornithine aminotransferase wild-type activity.
- D251 (= D243) mutation to A: Loss of N-acetylornithine aminotransferase activity.; mutation to E: Retains 20% of N-acetylornithine aminotransferase wild-type activity.
- Q254 (= Q246) mutation to A: Retains 0.9% of N-acetylornithine aminotransferase wild-type activity.
- K280 (= K272) mutation to A: Loss of N-acetylornithine aminotransferase activity.
- T308 (= T301) mutation to A: Retains 0.3% of N-acetylornithine aminotransferase wild-type activity.
- R402 (≠ K394) mutation to A: 2080-fold increase in KM for acetylornithine, but does not affect KM for 2-oxoglutarate. Retains 18% of N-acetylornithine aminotransferase wild-type activity.
6j2vA Gaba aminotransferase from corynebacterium glutamicum (see paper)
30% identity, 95% coverage: 7:416/430 of query aligns to 19:434/440 of 6j2vA
- active site: L35 (≠ Y22), Y154 (≠ F144), D256 (= D243), K285 (= K272)
- binding 4-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]butanoic acid: G127 (= G117), A128 (= A118), Y154 (≠ F144), H155 (= H145), R157 (≠ V147), E223 (= E210), E228 (= E215), D256 (= D243), I258 (= I245), K285 (= K272), G313 (= G300), T314 (= T301)
Q9M8M7 Acetylornithine aminotransferase, chloroplastic/mitochondrial; ACOAT; Acetylornithine transaminase; AOTA; Protein HOPW1-1-INTERACTING 1; EC 2.6.1.11 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
30% identity, 91% coverage: 21:413/430 of query aligns to 72:449/457 of Q9M8M7
Sites not aligning to the query:
- 1:41 modified: transit peptide, Chloroplast and mitochondrion
- 42 modified: N-acetylvaline; in Acetylornithine aminotransferase, chloroplastic
1wkhA Acetylornithine aminotransferase from thermus thermophilus hb8
30% identity, 90% coverage: 34:421/430 of query aligns to 27:386/387 of 1wkhA
- active site: F132 (= F144), E184 (= E210), D217 (= D243), Q220 (= Q246), K246 (= K272), T275 (= T301), R363 (≠ K394)
- binding 4-[(1,3-dicarboxy-propylamino)-methyl]-3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridinium: Y46 (≠ C53), S104 (≠ T116), G105 (= G117), T106 (≠ A118), F132 (= F144), S133 (≠ H145), E184 (= E210), E189 (= E215), D217 (= D243), I219 (= I245), K246 (= K272), R363 (≠ K394)
Sites not aligning to the query:
1wkgA Acetylornithine aminotransferase from thermus thermophilus hb8
30% identity, 90% coverage: 34:421/430 of query aligns to 27:386/387 of 1wkgA
- active site: F132 (= F144), E184 (= E210), D217 (= D243), Q220 (= Q246), K246 (= K272), T275 (= T301), R363 (≠ K394)
- binding n~2~-acetyl-n~5~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-l-ornithine: Y46 (≠ C53), G105 (= G117), T106 (≠ A118), F132 (= F144), S133 (≠ H145), R135 (≠ V147), E184 (= E210), D217 (= D243), I219 (= I245), Q220 (= Q246), K246 (= K272), G273 (≠ N299), T274 (≠ G300), T275 (= T301)
Sites not aligning to the query:
1vefA Acetylornithine aminotransferase from thermus thermophilus hb8
30% identity, 90% coverage: 34:421/430 of query aligns to 27:386/387 of 1vefA
- active site: F132 (= F144), D217 (= D243), K246 (= K272), T275 (= T301), R363 (≠ K394)
- binding pyridoxal-5'-phosphate: G105 (= G117), T106 (≠ A118), F132 (= F144), S133 (≠ H145), E184 (= E210), D217 (= D243), I219 (= I245), K246 (= K272)
Sites not aligning to the query:
Q5SHH5 [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.118 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
30% identity, 90% coverage: 34:421/430 of query aligns to 35:394/395 of Q5SHH5
- GT 113:114 (≠ GA 117:118) binding pyridoxal 5'-phosphate
- K254 (= K272) modified: N6-(pyridoxal phosphate)lysine
- T283 (= T301) binding pyridoxal 5'-phosphate
Query Sequence
>WP_085635152.1 NCBI__GCF_002115805.1:WP_085635152.1
MPKDMSHSVSIFERRESAARSYCRGMPATFATAQGSEITDEAGKTWIDFLAGCSSLNYGH
NDPDMKAALIEHISNDGLAHGLDLHTDTKAAFLEAFESHILEPRDMDHRVMFTGPTGANA
VEAAMKIARKVTGRTNIIAFTNGFHGVTTGALSATGNGYHRGGAGTSLNGVTRMPFDNYF
PGETNTAEFLEAMLKDQSGGVDAPAAILLETVQGEGGLNAASPEWVRHIAKLAKDNGALL
IIDDIQAGCGRCGTFFSFEDMGVTPDIVTMAKSVSGFGLPMAMVLVKPDYDIFGPAEHNG
TFRGNTHAFVTARVAIEKFWSNDAFQRELSEKAQIVHDALADLAAMVPDAHLKGRGLMQG
VDVISGDLASEICARAYEKGLIIETSGSEDQVIKVLAPLTTPTDTLRKGLNILLDAANDV
LTGTNKIAAE
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory