Comparing WP_085635693.1 NCBI__GCF_002115805.1:WP_085635693.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
8y4wA Sialic acid bound form of tripartite atp-independent periplasmic (trap) transporter from fusobacterium nucleatum.
29% identity, 94% coverage: 17:432/442 of query aligns to 194:606/612 of 8y4wA
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
28% identity, 94% coverage: 24:440/442 of query aligns to 9:421/427 of 8b01B
>WP_085635693.1 NCBI__GCF_002115805.1:WP_085635693.1
MLWQTMNQTVELGWDFYLPVIIFVGLIALAVPVWAAIGTAAIAMLVMSGDLPLSLVGEKL
FTGIDAFALTAVPLFILTGDVLVRTGLSRKFLDVAEALTCFAKGGFGSATVLVCGMFAAI
SGSDAAGAAAVGRMTIARLVESGYPRPYACALVAAGACTGILIPPSIAYIIIGLVLGISA
STLFLAALIPGLAILVSILITNLIMNRIYAYEGGGNMSMGEWAGNLGRSLKSGWYAFIVP
GIIFYGIFSGRLTPTEAGATAVVVTIIMGFILRTLTLADFPAMLVSSAKVNGVILPIIAF
SAPLAEALAIMGVPQGFVTSVTGLTNEPWLLILLMIGILIAAGCVMETTPNIVILAPILK
PLADNIGMNEIQFCIMMITALGVGFITPPLGLNLFVVSGITGESILKIAARAVPFVLCMF
VVVLLIAYVPAISTTLLPDIYK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory