SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_085636380.1 NCBI__GCF_002115805.1:WP_085636380.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8y4wA Sialic acid bound form of tripartite atp-independent periplasmic (trap) transporter from fusobacterium nucleatum.
21% identity, 46% coverage: 311:657/756 of query aligns to 252:592/612 of 8y4wA

query
sites
8y4wA
F
 
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L
F
 
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A
 
G
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M
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N
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R
F
 
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F
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N
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A
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K
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A
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M
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L
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Y
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G
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G
P
 
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G
K
 
H
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N
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A
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A
S
 
S
G
 
L
L
 
I
M
 
F
G
 
S
M
 
G
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M
N
 
S
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G
T
x
S
S
x
A
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I
G
 
A
N
 
D
V
 
A
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G
A
 
G
T
 
L
G
 
G
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Q
L
 
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E
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K
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A
M
 
M
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R
K
 
D
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E
G
 
G
Y
 
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D
K
 
D
V
 
I
A
 
C
G
 
G
A
 
G
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L
E
 
T
A
 
A
A
 
A
A
 
S
S
 
C
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I
G
 
I
G
 
G
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P
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-
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A
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W
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P

Query Sequence

>WP_085636380.1 NCBI__GCF_002115805.1:WP_085636380.1
MVQESTQADEGLIAEGVDEEPIEGNRRLFTGWRLQAVAGFAALYALFHMAALNGVSISAY
TGITIPFLPQFPMETWNFRIVHIAGALALGFLVYNAMMFGDSDDEAGRSGPWDKIAYLLM
LPALFALGTSLWFARTIASGELPEMGGLTTWPAFAGTPIYGQEVWYFGVPLLAASIGGVV
LGWLEKAPRDQFRASDILLAICGVAVAAYLIAIYGTAARNSVGTPFVPIGVAFAATAGTV
MILELTRRVAGLALVIITGVFLVYTFTAHLLPGILAVQSAYSWQRFFGHVYSDAGILGPT
TAVSSTYIILFIIFAAFLQASKVGDYFVNFAFAAAGRARGGPAKVAIFASGLMGMINGTS
AGNVVATGSLTIPLMKKVGYRPKVAGAVEAAASTGGQIMPPIMGAGAFIMAEITGIPYQD
IAIAAIIPAVLYFVSVYFMVDFEAAKLGMRGMREDELPKLAKMVRQLYLFIPIIILIAAL
FMGYSVIRAGTLATIAAAMVSWLTPFPMTLRGIAKAFELAGIMSIQIIAVCACAGIIVGV
ISLTGVGARFSAVLLDLAATSQLLALFFAMCIAILLGMGMPTTAAYAVAASVVAPGLVQL
GIPQLTAHFFVFYFAVLSAITPPVALASYAAAGISGANPMETSVVSFKVGIAAFIVPFMF
FYNSALLMDGTWFEVIRAGVTAVFGVFLLSGGVQGWFLGQRSAWFIRLALIGAALFMIEG
GLVTDLIGIGVTGAAWLVQKLFHPDPNAPIPVRGAD

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory