SitesBLAST

CV 59:60 (≠ YT 46:47) binding FAD
EK 80:81 (≠ DA 66:67) binding FAD
87:95 (vs. 73:81, 22% identical) binding FAD
H91 (≠ R77) modified: Tele-8alpha-FAD histidine
H109 (≠ G98) to R: in DMGDHD; shows 10 fold lower catalytic efficiency due to lower cofactor saturation and reduced thermal stability; dbSNP:rs121908331
V219 (= V217) binding FAD
S279 (≠ G273) to P: in dbSNP:rs532964

Sites not aligning to the query:

397:402 binding FAD
530 A → G: in dbSNP:rs1805073
646 S → P: in dbSNP:rs1805074

Q63342 Dimethylglycine dehydrogenase, mitochondrial; ME2GLYDH; EC 1.5.8.4 from Rattus norvegicus (Rat) (see 2 papers)
27% identity, 66% coverage: 27:311/434 of query aligns to 33:307/857 of Q63342

query
sites
Q63342

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CV 52:53 (≠ YT 46:47) binding FAD
EK 73:74 (≠ DA 66:67) binding FAD
80:88 (vs. 73:81, 22% identical) binding FAD
H84 (≠ R77) modified: Tele-8alpha-FAD histidine
V212 (= V217) binding FAD
W244 (vs. gap) binding FAD

Sites not aligning to the query:

390:395 binding FAD
573:575 binding (6S)-5,6,7,8-tetrahydrofolate
669 binding (6S)-5,6,7,8-tetrahydrofolate
676:678 binding (6S)-5,6,7,8-tetrahydrofolate
737 binding (6S)-5,6,7,8-tetrahydrofolate

7cyxA Crystal strcuture of glycine oxidase from bacillus cereus atcc 14579 (see paper)
24% identity, 83% coverage: 36:396/434 of query aligns to 1:350/363 of 7cyxA

query
sites
7cyxA

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binding flavin-adenine dinucleotide: I7 (= I42), G8 (= G43), G10 (= G45), V11 (≠ Y46), I12 (≠ T47), V30 (≠ L65), E31 (≠ D66), K32 (≠ A67), E38 (≠ G73), A39 (= A74), S40 (= S75), A43 (≠ N78), G45 (= G80), L46 (≠ Q81), V171 (= V217), G200 (= G244), G201 (≠ N245), W203 (≠ Y247), G298 (= G346), R300 (≠ L348), P301 (≠ A349), Y326 (≠ S372), R327 (≠ G373), N328 (≠ H374), G329 (= G375), I330 (≠ V376)

Q8GAI3 4-methylaminobutanoate oxidase (formaldehyde-forming); MABO; Demethylating gamma-N-methylaminobutyrate oxidase; Gamma-N-methylaminobutyrate oxidase 1; EC 1.5.3.19 from Paenarthrobacter nicotinovorans (Arthrobacter nicotinovorans) (see paper)
26% identity, 88% coverage: 16:399/434 of query aligns to 12:392/824 of Q8GAI3

query
sites
Q8GAI3

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W66 (≠ G76) mutation W->F,S: Contains a non-covalently bound FAD. Loss of enzyme activity.
H67 (≠ R77) mutation to A: Contains a non-covalently bound FAD. Exhibits about 10% of the wild-type enzyme activity.

S5FMM4 Glycine oxidase; GO; BliGO; EC 1.4.3.19 from Bacillus licheniformis (see paper)
23% identity, 81% coverage: 50:402/434 of query aligns to 18:361/369 of S5FMM4

query
sites
S5FMM4

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K

A

L

A

A

S

F

R

S

P

E

A

S

D

D

A

-

D

-

L

-

H

-

Q

-

Y

-

A

R

E

E

H

H

L

L

Q

M

T

Q

R

M

Y

G

G

A

Y

L

D

D

R

S

I

V

E

E

A

W

L

L

D

E

R

A

D

D

A

E

F

V

H

Y

A

K

L

L

C

E

P

P

S

N

-

A

-

G

P

K

D

G

Y

I

I

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G

G

G

A

T

N

L

F

D

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C

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A

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A

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V

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I

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-

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A

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A

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x
S

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G

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Y

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D

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H

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A

-

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N

-

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Y

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R

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H

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G

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A

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I

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D

Y

Q

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C

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A

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L

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T

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R

G

M

N

P

P

Y

Y

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H

R

P

P

E

N

N

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D

-

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L

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F

A

A

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A

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Y

H

S

F

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N

G

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x
I

G

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A

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x
M

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A

G51 (= G83) mutation to S: Shows 4.3- and 107-fold increase of affinity to glyphosate and glycine, respectively. Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with R-54, R-81, C-202, V-332 and V-342.
A54 (≠ Q86) mutation to R: Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with S-51, R-81, C-202, V-332 and V-342.
K81 (≠ V120) mutation to R: Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with S-51, R-54, C-202, V-332 and V-342.
S202 (≠ G244) mutation to C: Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with S-51, R-54, R-81, V-332 and V-342.
I332 (≠ V376) mutation to V: Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with S-51, R-54, R-81, C-202 and V-342.
M342 (≠ L386) mutation to V: Shows 7.1- and 8-fold increase of affinity and catalytic efficiency to glyphosate, respectively, while the substrate affinity to glycine decreases 235-fold and catalytic efficiency decreases 113-fold; when associated with S-51, R-54, R-81, C-202 and V-332.

5i39A High resolution structure of l-amino acid deaminase from proteus vulgaris with the deletion of the specific insertion sequence (see paper)
22% identity, 75% coverage: 36:362/434 of query aligns to 24:337/383 of 5i39A

query
sites
5i39A

R

Q

A

A

D

D

V

V

C

V

I

V

I
x
V

G
|
G

A

A

G
|
G

Y
x
I

T
x
L

G

G

L

I

S

M

A

T

A

A

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N

L

L

A

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E

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R

G

G

A

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V

V

L

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L
x
V

D
x
E

A
x
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H

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V

I

G

A

F

G

G

E

A
x
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S
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S

G

S

R

R

N
x
F

G
x
Y

G

G

Q
|
Q

L
x
A

G

I

S

S

G

Y

Q

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M

Q

P

D

D

Q

E

I

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T

F

L

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E

L

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L

H

V

L

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G

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A

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R

K

A

H

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W

D

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L

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E

-

D

-

S

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A

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G

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D

C

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Y

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R

V

P

P

A

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D

E

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x
A

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x
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G
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G

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x
G

G

-

Y

-

L

-

G

-

L

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R

-

Q

-

V

V

I
x
W

A

S

R

R

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F

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N

N

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Y

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P

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x
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A

A

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A

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x
P

N

G

-

G

-

I

Y

F

F

F

R

R

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H

A

D

D

G

G

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-

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D

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L

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H

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M

A

A

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A

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K

active site: F66 (≠ N78), Q69 (= Q81), A70 (≠ L82), Q248 (≠ E274), P267 (≠ V293)
binding flavin-adenine dinucleotide: V30 (≠ I42), G31 (= G43), G33 (= G45), I34 (≠ Y46), L35 (≠ T47), V53 (≠ L65), E54 (≠ D66), K55 (≠ A67), Q62 (≠ A74), S63 (= S75), F66 (≠ N78), Y67 (≠ G79), Q69 (= Q81), A196 (≠ H216), A197 (≠ V217), G226 (= G244), G227 (≠ N245), W229 (≠ I256), Q248 (≠ E274), Q250 (≠ R276), G321 (= G346), M323 (≠ L348)

Sites not aligning to the query:

binding flavin-adenine dinucleotide: 348, 349, 350, 351, 352, 353

Query Sequence

>WP_085636469.1 NCBI__GCF_002115805.1:WP_085636469.1
MNLLFSNDARGSYPDSWYAATATPLPPFAPLQGETRADVCIIGAGYTGLSAALHLAEMGA
DVVLLDAHRVGFGASGRNGGQLGSGQRQDQITLEKLVGSDAARALWDLGEDSKTLVRDLV
ARHGLDCYLRDGVAWAASRPADADDLHQYAEHLQTRYGYDRIEALDRDAFHALCPSPDYI
GGTLDMGAGHLHPLRLALGLADAAAKAGARIHERSHVHDIRHGSKITVRTDAGHVIADQV
ILAGNGYLGGLDRQVIARVMPINNYIVATEPLGEDRMKVLTRDVAVADSRFVVNYFRLSH
DGRLLFGGGETYGYRFPADIPALVRKRMAVIYPHLRDVRIDYAWGGTLAITIRRMPYLAR
VRPNMLSASGYSGHGVGTAIQAGKLLAEATRGTSDGFETYNAIPHTPFPGGGMFRTPLLT
LAMTWFAMRDRLGI

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory