SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_085638026.1 NCBI__GCF_002115805.1:WP_085638026.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8y4wA Sialic acid bound form of tripartite atp-independent periplasmic (trap) transporter from fusobacterium nucleatum.
23% identity, 46% coverage: 316:662/761 of query aligns to 252:592/612 of 8y4wA

query
sites
8y4wA
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C
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Query Sequence

>WP_085638026.1 NCBI__GCF_002115805.1:WP_085638026.1
MTDPKTAPIDDEPDAPVLAEGVDEEPIESNRRLFSGRAYLLMAGLSTFYAAFHMIALNGV
SISAWTGLDLPFLPQFPLETWNFRIAHIAGALALGFLLFSAHTFSDDGPPHKETRAISIL
AAILVLPALVSGVTAIGFLNLINSGTLPEMGGLTTWAAFPGTEIYSSEVWWFGTPLLIAT
FGAILTGWFERRGRELFAASDVVLALCGLVVAIYLIGIYGTAARNSVGTPFVPIGVAFAA
TAGSAMILELTRRVAGLALVIITAVFLVYTFTAHLLPGILAVQSAYSWQRFFGHVYSDAG
ILGPTTAVSSTYIILFIIFAAFLQASKVGDYFVNFAFATAGRARGGPAKVAIFASGLMGM
INGTSAGNVVATGSLTIPLMKKVGYQKKIAGAVEAGASTGGQIMPPIMGAGAFIMAEITG
IPYTDIAIAAIIPAVLYFVSIYFMVDFEAAKLGMRGMREDELPKFNKLVRQVYLFIPILI
LIAALFMGYSVIRAGTLATVAAAVVSWFTPNRMGLRSILKAFELAGIMSIQIIAVCACAG
IIVGVISLTGVGARFSSVLLDLAGVSQLLALFFAMCIAILLGMGMPTTAAYAVAASVVAP
GLVQLGIPQLTAHFFVFYFAVLSAITPPVALASYAAAGISGANPMETSVASFKIGIAAFI
VPYMFFYNSALLMDGTWFEVLRAGVTATIGVFLLSSGVQGWFLGGRSAWFLRVALIFAAL
FMIEGGLITDLIGVGIAAATFFVQKVVHARPDATIPVRGAD

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory