SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_085769979.1 NCBI__GCF_002117405.1:WP_085769979.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 4 hits to proteins with known functional sites (download)

6j2lA Crystal structure of bi-functional enzyme (see paper)
44% identity, 81% coverage: 5:91/107 of query aligns to 114:200/200 of 6j2lA

query
sites
6j2lA
L
 
L
D
 
Y
D
 
Q
L
 
L
A
 
E
R
 
Q
I
 
L
I
 
L
R
 
A
T
 
E
R
 
R
R
 
K
E
 
Y
A
 
A
T
 
D
E
 
P
E
 
E
A
 
T
S
 
S
Y
 
Y
T
 
T
K
 
A
S
 
K
L
 
L
F
 
Y
V
 
A
A
 
S
G
 
G
T
 
T
P
 
K
R
 
R
I
 
I
A
 
A
K
 
Q
K
 
K
F
 
V
G
 
G
E
 
E
E
|
E
A
 
G
V
 
V
E
 
E
T
 
T
V
 
A
I
 
L
A
 
A
A
 
A
L
 
T
G
 
V
E
 
H
D
 
D
K
 
R
Q
 
F
A
 
E
L
 
L
A
 
T
G
 
N
E
|
E
I
 
A
A
 
S
D
|
D
V
 
L
L
 
M
Y
 
Y
H
 
H
L
 
L
L
 
L
V
 
V
L
 
L
M
 
L
E
 
Q
A
 
D
R
 
Q
E
 
D
I
 
L
A
 
D
L
 
L
T
 
T
D
 
T
V
 
V
L
 
I
A
 
E
E
 
N
L
 
L
E
 
H
R
 
K
R
 
R

Sites not aligning to the query:

6j2lB Crystal structure of bi-functional enzyme (see paper)
47% identity, 60% coverage: 28:91/107 of query aligns to 122:185/185 of 6j2lB

query
sites
6j2lB
L
 
L
F
 
Y
V
 
A
A
 
S
G
 
G
T
 
T
P
 
K
R
 
R
I
 
I
A
 
A
K
 
Q
K
 
K
F
 
V
G
 
G
E
 
E
E
|
E
A
 
G
V
 
V
E
|
E
T
 
T
V
 
A
I
 
L
A
 
A
A
 
A
L
 
T
G
 
V
E
 
H
D
 
D
K
 
R
Q
 
F
A
 
E
L
 
L
A
 
T
G
 
N
E
|
E
I
 
A
A
 
S
D
|
D
V
 
L
L
 
M
Y
 
Y
H
 
H
L
 
L
L
 
L
V
 
V
L
 
L
M
 
L
E
 
Q
A
 
D
R
 
Q
E
 
D
I
 
L
A
 
D
L
 
L
T
 
T
D
 
T
V
 
V
L
 
I
A
 
E
E
 
N
L
 
L
E
 
H
R
 
K
R
 
R

Sites not aligning to the query:

7bgnA Crystal structure of mthisn2-amp complex, a bifunctional enzyme from the histidine biosynthetic pathway (see paper)
35% identity, 73% coverage: 14:91/107 of query aligns to 126:203/204 of 7bgnA

query
sites
7bgnA
T
 
S
R
 
Q
R
|
R
E
 
K
A
 
A
T
 
E
E
 
V
E
 
V
A
 
P
S
|
S
Y
x
W
T
|
T
K
 
K
S
 
R
L
 
L
F
 
L
V
 
L
A
 
-
G
 
N
T
 
D
P
 
K
R
 
L
I
 
L
A
 
C
K
 
S
K
 
K
F
 
I
G
 
R
E
 
E
E
|
E
A
 
A
V
 
N
E
 
E
T
 
L
V
 
C
-
 
E
I
 
T
A
 
L
A
 
E
L
 
N
G
 
N
E
 
E
D
 
D
K
 
K
Q
 
S
A
 
R
L
 
T
A
 
A
G
 
S
E
|
E
I
 
M
A
 
A
D
|
D
V
 
V
L
 
L
Y
|
Y
H
 
H
L
 
A
L
 
M
V
 
V
L
 
L
M
 
L
E
 
A
A
 
L
R
 
K
E
 
D
I
 
V
A
 
K
L
 
V
T
 
E
D
 
E
V
 
V
L
 
L
A
 
Q
E
 
V
L
 
L
E
 
R
R
 
Q
R
|
R

Sites not aligning to the query:

7bgmA Crystal structure of mthisn2, a bifunctional enzyme from the histidine biosynthetic pathway (see paper)
37% identity, 73% coverage: 14:91/107 of query aligns to 136:212/213 of 7bgmA

query
sites
7bgmA
T
 
S
R
 
Q
R
 
R
E
 
K
A
 
A
T
 
-
E
 
E
E
 
V
A
 
V
S
 
S
Y
 
W
T
 
T
K
 
K
S
 
R
L
 
L
F
 
L
V
 
L
A
 
-
G
 
N
T
 
D
P
 
K
R
 
L
I
 
L
A
 
C
K
 
S
K
 
K
F
 
I
G
 
R
E
 
E
E
|
E
A
 
A
V
 
N
E
 
E
T
 
L
V
 
C
-
 
E
I
 
T
A
 
L
A
 
E
L
 
N
G
 
N
E
 
E
D
 
D
K
 
K
Q
 
S
A
 
R
L
 
T
A
 
A
G
 
S
E
|
E
I
 
M
A
 
A
D
|
D
V
 
V
L
 
L
Y
 
Y
H
 
H
L
 
A
L
 
M
V
 
V
L
 
L
M
 
L
E
 
A
A
 
L
R
 
K
E
 
D
I
 
V
A
 
K
L
 
V
T
 
E
D
 
E
V
 
V
L
 
L
A
 
Q
E
 
V
L
 
L
E
 
R
R
 
Q
R
 
R

Sites not aligning to the query:

Query Sequence

>WP_085769979.1 NCBI__GCF_002117405.1:WP_085769979.1
MSFSLDDLARIIRTRREATEEASYTKSLFVAGTPRIAKKFGEEAVETVIAALGEDKQALA
GEIADVLYHLLVLMEAREIALTDVLAELERRTGQSGLAEKAARGKPS

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory