SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_086508323.1 NCBI__GCF_002151265.1:WP_086508323.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

1us4A Putative glur0 ligand binding core with l-glutamate (see paper)
36% identity, 91% coverage: 20:310/319 of query aligns to 1:295/297 of 1us4A

query
sites
1us4A
A
 
A
A
 
Q
Q
 
E
Q
 
F
L
 
I
S
 
T
I
 
I
A
 
G
T
 
S
G
 
G
G
 
S
T
 
T
G
 
T
G
 
G
V
|
V
Y
|
Y
Y
 
F
P
 
P
I
 
V
G
 
A
G
 
T
G
 
G
F
 
I
A
 
A
E
 
K
M
 
L
I
 
V
N
 
N
N
 
D
H
 
A
I
 
N
E
 
V
G
 
G
A
 
I
S
 
R
A
 
A
T
 
N
A
 
A
E
 
R
V
 
S
T
 
T
G
 
G
A
 
G
S
|
S
V
 
V
E
 
A
N
 
N
M
 
I
G
 
N
L
 
A
I
 
I
M
 
N
R
 
A
G
 
G
D
 
E
A
 
F
D
 
E
L
 
M
A
 
A
L
 
L
A
 
A
L
x
Q
A
 
N
D
 
D
T
 
I
V
 
A
Y
 
Y
Q
 
Y
A
 
A
Y
 
Y
N
 
Q
G
 
G
T
 
C
G
 
C
-
 
I
-
 
P
D
 
A
F
 
F
E
 
E
G
 
G
R
 
K
Q
 
P
I
 
V
E
 
K
N
 
T
T
 
I
R
 
R
A
 
A
L
 
L
A
 
A
S
 
A
V
 
L
Y
 
Y
P
 
P
N
x
E
A
 
V
V
 
V
Q
 
H
L
 
V
V
 
V
T
 
A
L
 
R
A
 
K
D
 
D
S
 
A
D
 
G
I
 
I
Q
 
R
S
 
T
L
 
V
E
 
A
D
 
D
L
 
L
R
 
K
G
 
G
K
 
K
R
 
R
V
 
V
S
 
V
V
 
V
G
 
G
A
 
D
P
 
V
G
 
G
S
|
S
G
|
G
T
|
T
E
 
E
L
 
Q
N
 
N
A
 
A
R
 
R
A
 
Q
L
 
I
L
 
L
E
 
E
A
 
A
N
 
Y
G
 
G
I
 
L
T
 
T
Y
 
F
D
 
D
D
 
D
F
 
L
-
 
G
R
 
Q
P
 
A
Q
 
I
R
 
R
L
 
V
N
 
S
F
 
A
N
 
S
E
 
Q
T
 
G
A
 
I
D
 
Q
A
 
L
I
 
M
R
 
Q
D
 
D
G
 
K
D
 
R
I
 
A
D
 
D
A
 
A
G
 
L
F
 
F
W
 
Y
S
x
T
V
|
V
G
 
G
P
 
L
P
 
G
T
 
A
S
 
S
S
 
A
I
 
I
L
 
Q
N
 
Q
L
 
L
A
 
A
A
 
L
T
 
T
R
 
T
S
 
P
I
 
I
R
 
A
L
 
L
V
 
V
G
 
A
F
 
V
S
 
D
E
 
L
E
 
N
E
 
R
I
 
I
E
 
Q
N
 
A
A
 
I
R
 
A
E
 
K
V
 
K
E
 
Y
P
 
P
T
 
F
F
 
Y
A
 
V
A
 
G
Y
 
F
E
 
N
L
 
I
R
 
P
A
 
G
G
 
G
M
 
T
Y
 
Y
D
 
K
G
 
G
M
 
V
D
 
D
E
 
V
A
 
T
V
 
T
Q
 
P
T
 
T
I
 
V
S
 
A
I
 
V
P
 
Q
N
 
A
V
 
M
L
 
L
V
 
I
V
 
A
N
 
S
A
 
E
D
 
R
M
 
L
D
 
S
E
 
E
E
 
E
L
 
T
A
 
V
Y
 
Y
Q
 
K
L
 
F
T
 
M
K
 
K
L
 
A
L
 
V
F
 
F
E
 
G
N
 
N
T
 
L
D
 
E
E
 
A
L
 
F
I
 
K
A
 
K
V
 
I
H
 
H
P
 
P
A
 
N
A
 
L
N
 
E
D
 
R
T
 
F
T
 
F
-
 
G
V
 
L
E
 
E
F
 
K
S
 
A
I
 
V
D
 
K
S
 
G
T
 
L
P
 
P
V
 
I
P
 
P
F
 
L
H
 
H
D
 
P
G
 
G
A
 
A
L
 
E
R
 
R
Y
 
F
Y
 
Y
E
 
K
E
 
E
V
 
A
G
 
G

Sites not aligning to the query:

Query Sequence

>WP_086508323.1 NCBI__GCF_002151265.1:WP_086508323.1
MRALKYVAAASLMATAPLAAAQQLSIATGGTGGVYYPIGGGFAEMINNHIEGASATAEVT
GASVENMGLIMRGDADLALALADTVYQAYNGTGDFEGRQIENTRALASVYPNAVQLVTLA
DSDIQSLEDLRGKRVSVGAPGSGTELNARALLEANGITYDDFRPQRLNFNETADAIRDGD
IDAGFWSVGPPTSSILNLAATRSIRLVGFSEEEIENAREVEPTFAAYELRAGMYDGMDEA
VQTISIPNVLVVNADMDEELAYQLTKLLFENTDELIAVHPAANDTTVEFSIDSTPVPFHD
GALRYYEEVGAEVADHQRP

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory