SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_086508325.1 NCBI__GCF_002151265.1:WP_086508325.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
25% identity, 24% coverage: 205:366/673 of query aligns to 60:219/427 of 8b01B

query
sites
8b01B
F
 
F
V
 
V
L
 
L
F
 
T
G
 
G
A
 
H
F
 
L
L
 
M
E
 
N
S
 
S
T
 
A
G
 
G
A
 
I
G
 
T
K
 
E
F
 
R
F
 
I
I
 
F
D
 
N
M
 
F
A
 
A
Y
 
K
A
 
A
A
 
M
T
 
V
G
 
G
R
 
H
Q
 
I
R
 
T
G
 
G
G
 
S
P
 
L
A
 
G
K
 
H
A
 
V
A
 
N
V
 
I
I
 
L
A
 
A
S
 
S
A
 
L
G
 
L
M
 
F
G
x
S
S
 
G
I
 
M
S
|
S
G
|
G
S
 
S
A
 
A
I
 
L
A
 
A
N
 
D
V
 
A
V
 
G
T
 
G
T
 
L
G
 
G
A
 
Q
F
 
L
T
 
E
I
 
I
P
 
K
L
 
S
M
 
M
K
 
R
R
 
D
L
 
A
G
 
K
Y
 
Y
K
 
D
P
 
D
H
 
D
Q
 
F
A
 
A
G
 
G
G
 
G
I
 
L
E
 
T
A
 
A
A
 
A
A
 
S
S
 
C
T
 
I
G
 
I
G
|
G
Q
 
P
I
 
L
M
x
V
P
|
P
P
|
P
L
 
-
M
 
-
G
 
S
A
 
I
G
 
P
A
 
L
F
 
V
L
 
I
I
 
Y
A
 
G
E
 
V
Y
 
V
T
 
S
N
 
N
T
 
T
P
 
S
Y
 
I
L
 
G
D
 
A
V
 
L
V
 
F
K
 
L
V
 
A
S
 
G
I
 
A
L
 
I
P
 
P
A
 
G
I
 
L
M
 
L
Y
 
C
F
 
C
A
 
I
T
 
A
V
 
L
Y
 
C
L
 
I
F
 
M
V
 
T
H
 
Y
I
 
F
I
 
I
A
 
A
L
 
K
K
 
K
Q
 
R
G
 
G
M
 
Y
Q
 
M
G
 
T
L
 
L
P
 
P
K
 
R
S
 
A
E
 
S
L
 
R
P
 
K
Q
 
E
M
 
R
R
 
L
D
 
I
V
 
A
L
 
F
R
 
R
E
 
D
G
 
A
W
 
F
H
 
L
F
 
S
L
 
L
L
 
L

Sites not aligning to the query:

Query Sequence

>WP_086508325.1 NCBI__GCF_002151265.1:WP_086508325.1
MSESANPPVTVPGGNAIQPRPILWLITLVAVGLSLFQLYSAGIQPLGLFYQRSVHLMLIM
MLAFLIFPVFGPNRKRGVLGWLIDAAFFAGALITGGYMVLYLDEIIRRAGFWSQTDIIVG
CIAVVTVLEASRRAVGLGMTIIGAIAILYAFAGPRGELPWLGQFMPGILEHRGYNLDRVV
GQLYLGQEGIFGLPLGVAATFIFVFVLFGAFLESTGAGKFFIDMAYAATGRQRGGPAKAA
VIASAGMGSISGSAIANVVTTGAFTIPLMKRLGYKPHQAGGIEAAASTGGQIMPPLMGAG
AFLIAEYTNTPYLDVVKVSILPAIMYFATVYLFVHIIALKQGMQGLPKSELPQMRDVLRE
GWHFLLPLAVLVWLLAMHMSPMRVGFYAVVTMVAVAALRYTIWFFFVAPRQGQPVTLAST
GRVIWAGFVKLIEGLELGARNAVSVSLACAVAGIIVGVVGLTGLGLKFSAMMMAFSGGNI
VLALLMVLLASLILGMGLPVTASYIVLIVLVGPALTAEFGIPLLIAHLVVFWYSQDSNVT
PPIALAGFAGAAIAGSKPMATGVQAWKFAKGLYLIPMFMVFNPEIIMGGPLHILAWNGLI
AILALGAFAAALEGYLFTRMSWLPRIAISGAIVAVFYPNFMVEAVGVAVMILAIGANWLA
SRREIHSAGAGTT

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory