Comparing WP_086508325.1 NCBI__GCF_002151265.1:WP_086508325.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
25% identity, 24% coverage: 205:366/673 of query aligns to 60:219/427 of 8b01B
Sites not aligning to the query:
>WP_086508325.1 NCBI__GCF_002151265.1:WP_086508325.1
MSESANPPVTVPGGNAIQPRPILWLITLVAVGLSLFQLYSAGIQPLGLFYQRSVHLMLIM
MLAFLIFPVFGPNRKRGVLGWLIDAAFFAGALITGGYMVLYLDEIIRRAGFWSQTDIIVG
CIAVVTVLEASRRAVGLGMTIIGAIAILYAFAGPRGELPWLGQFMPGILEHRGYNLDRVV
GQLYLGQEGIFGLPLGVAATFIFVFVLFGAFLESTGAGKFFIDMAYAATGRQRGGPAKAA
VIASAGMGSISGSAIANVVTTGAFTIPLMKRLGYKPHQAGGIEAAASTGGQIMPPLMGAG
AFLIAEYTNTPYLDVVKVSILPAIMYFATVYLFVHIIALKQGMQGLPKSELPQMRDVLRE
GWHFLLPLAVLVWLLAMHMSPMRVGFYAVVTMVAVAALRYTIWFFFVAPRQGQPVTLAST
GRVIWAGFVKLIEGLELGARNAVSVSLACAVAGIIVGVVGLTGLGLKFSAMMMAFSGGNI
VLALLMVLLASLILGMGLPVTASYIVLIVLVGPALTAEFGIPLLIAHLVVFWYSQDSNVT
PPIALAGFAGAAIAGSKPMATGVQAWKFAKGLYLIPMFMVFNPEIIMGGPLHILAWNGLI
AILALGAFAAALEGYLFTRMSWLPRIAISGAIVAVFYPNFMVEAVGVAVMILAIGANWLA
SRREIHSAGAGTT
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory