SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_086508779.1 NCBI__GCF_002151265.1:WP_086508779.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 5 hits to proteins with known functional sites (download)

1nsjA Crystal structure of phosphoribosyl anthranilate isomerase from thermotoga maritima (see paper)
41% identity, 89% coverage: 11:204/217 of query aligns to 2:198/205 of 1nsjA

query
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1nsjA
T
 
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F

1lbmA Crystal structure of phosphoribosyl anthranilate isomerase (prai) in complex with reduced 1-(o-carboxyphenylamino)-1-deoxyribulose 5- phosphate (rcdrp) (see paper)
39% identity, 89% coverage: 11:204/217 of query aligns to 2:187/194 of 1lbmA

query
sites
1lbmA
T
 
V
R
 
R
I
 
V
K
 
K
F
 
I
C
|
C
G
 
G
L
 
I
S
 
T
R
 
N
E
 
L
Q
 
E
D
 
D
V
 
A
A
 
L
D
 
F
A
 
S
V
 
V
A
 
E
A
 
S
G
 
G
A
 
A
D
 
D
A
 
A
L
 
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G
F
 
F
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F
W
 
Y
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K
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F

1piiA Three-dimensional structure of the bifunctional enzyme phosphoribosylanthranilate isomerase: indoleglycerolphosphate synthase from escherichia coli refined at 2.0 angstroms resolution (see paper)
32% identity, 88% coverage: 14:203/217 of query aligns to 258:444/452 of 1piiA

query
sites
1piiA
K
 
K
F
 
V
C
|
C
G
 
G
L
 
L
S
 
T
R
 
R
E
 
G
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Q
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D
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A
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K
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A
A
 
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Y
A
 
D
A
 
A
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G
A
 
A
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I
A
 
Y
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G
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A
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R
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C
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N
E
 
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Q
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A
A
 
Q
T
 
E
L
 
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M
A
 
A
Q
 
A
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A
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P
A
 
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F
 
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Q
R
 
Y
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Q
 
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E
 
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I
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A
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D
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A
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E
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Y
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I
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A
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A
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E
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D
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Y
 
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F
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L
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G
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Q
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S
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N
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V
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L
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L
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A
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L
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A
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D
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N
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E
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A
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A
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Q
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-
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G
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C
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A
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G
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L
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D
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F
S
x
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A
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V
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E
A
 
S
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Q
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P
G
 
G
R
 
I
K
 
K
D
 
D
R
 
A
G
 
R
L
 
L
L
 
L
A
 
A
A
 
S

Sites not aligning to the query:

7etxA Crystal structure of bifunctional indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase (trpc) from corynebacterium glutamicum (see paper)
36% identity, 47% coverage: 107:209/217 of query aligns to 364:467/472 of 7etxA

query
sites
7etxA
K
x
R
A
|
A
L
 
I
R
x
S
M
 
M
R
 
S
D
 
S
D
 
P
L
 
L
D
 
G
L
 
A
H
 
E
A
 
V
A
 
A
A
 
A
E
 
A
A
 
V
Y
 
E
A
 
G
G
 
D
A
 
V
Q
 
D
A
 
K
L
 
L
L
 
I
L
 
L
D
 
D
A
 
A
Y
 
H
R
 
E
P
 
-
G
 
-
V
 
-
P
 
-
G
 
G
G
 
G
T
 
S
G
 
G
E
 
E
T
 
V
F
 
F
D
 
D
W
 
W
S
 
A
R
 
T
I
 
V
P
 
P
A
 
A
N
 
A
L
 
V
A
 
K
K
 
A
P
 
K
V
 
S
I
 
L
L
 
L
A
 
A
G
 
G
G
 
G
L
 
I
G
 
S
P
 
P
D
 
D
N
 
N
V
 
A
A
 
A
Q
 
Q
A
 
A
I
 
L
E
 
A
R
 
-
V
 
V
R
 
G
P
 
C
F
 
A
A
 
G
V
 
L
D
 
D
V
 
I
S
 
N
G
 
S
G
 
G
V
 
V
E
 
E
A
 
Y
A
 
P
-
 
A
-
 
G
-
 
A
-
 
G
-
 
T
-
 
W
P
 
A
G
 
G
R
 
A
K
 
K
D
 
D
R
 
A
G
 
G
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A
L
 
L
A
 
L
A
 
K
F
 
I
A
 
F
A
 
A
A
 
T
V
 
I
A
 
S

Sites not aligning to the query:

7etyA Crystal structure of bifunctional indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase (trpc) from corynebacterium glutamicum in complex with reduced 1-(o-carboxyphenylamino)-1- deoxyribulose 5-phosphate (rcdrp) (see paper)
36% identity, 47% coverage: 107:209/217 of query aligns to 362:465/470 of 7etyA

query
sites
7etyA
K
 
R
A
 
A
L
 
I
R
 
S
M
 
M
R
 
S
D
 
S
D
 
P
L
 
L
D
 
G
L
 
A
H
 
E
A
 
V
A
 
A
A
 
A
E
 
A
A
 
V
Y
 
E
A
 
G
G
 
D
A
 
V
Q
 
D
A
 
K
L
 
L
L
 
I
L
 
L
D
|
D
A
 
A
Y
 
H
R
 
E
P
 
-
G
 
-
V
 
-
P
 
-
G
|
G
G
|
G
T
 
S
G
|
G
E
 
E
T
 
V
F
 
F
D
 
D
W
 
W
S
 
A
R
 
T
I
 
V
P
 
P
A
 
A
N
 
A
L
 
V
A
 
K
K
 
A
P
 
K
V
 
S
I
 
L
L
 
L
A
 
A
G
 
G
G
|
G
L
 
I
G
 
S
P
 
P
D
 
D
N
 
N
V
 
A
A
 
A
Q
 
Q
A
 
A
I
 
L
E
 
A
R
 
-
V
 
V
R
 
G
P
 
C
F
 
A
A
 
G
V
 
L
D
|
D
V
 
I
S
x
N
G
x
S
G
 
G
V
 
V
E
 
E
A
 
Y
A
 
P
-
 
A
-
 
G
-
 
A
-
 
G
-
 
T
-
 
W
P
 
A
G
 
G
R
 
A
K
 
K
D
 
D
R
 
A
G
 
G
L
 
A
L
 
L
A
 
L
A
 
K
F
 
I
A
 
F
A
 
A
A
 
T
V
 
I
A
 
S

Sites not aligning to the query:

Query Sequence

>WP_086508779.1 NCBI__GCF_002151265.1:WP_086508779.1
MIDIQAVGCRTRIKFCGLSREQDVADAVAAGADALGFVLWPGSKRCVDEARLATLAAQVP
AFVTRVGLFVDQEPELIARSAEHLDLLQFHGDETPAFCAGFGRPWIKALRMRDDLDLHAA
AEAYAGAQALLLDAYRPGVPGGTGETFDWSRIPANLAKPVILAGGLGPDNVAQAIERVRP
FAVDVSGGVEAAPGRKDRGLLAAFAAAVAQADRTHRA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory