SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_086509854.1 NCBI__GCF_002151265.1:WP_086509854.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 4 hits to proteins with known functional sites (download)

O31645 PTS system mannose-specific EIIBCA component; EIIBCA-Man; EII-Man; EC 2.7.1.191 from Bacillus subtilis (strain 168) (see 2 papers)
25% identity, 92% coverage: 3:146/156 of query aligns to 502:646/650 of O31645

query
sites
O31645
L
 
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Sites not aligning to the query:

P46321 Probable licABCH operon regulator; EC 2.7.1.- from Bacillus subtilis (strain 168) (see paper)
28% identity, 88% coverage: 7:144/156 of query aligns to 501:633/641 of P46321

query
sites
P46321
L
 
L
P
 
K
P
 
K
E
 
E
R
 
L
A
 
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F
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F
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E
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V
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F
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E
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G
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P
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D

Sites not aligning to the query:

O31644 Transcriptional regulator ManR; Mannose operon transcriptional activator; EC 2.7.1.191 from Bacillus subtilis (strain 168) (see paper)
35% identity, 46% coverage: 51:121/156 of query aligns to 554:621/648 of O31644

query
sites
O31644
R
 
R
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E
R
 
K
L
 
M
G
 
S
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A
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T
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N
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I
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S

Sites not aligning to the query:

C0H3V2 Mannitol-specific phosphotransferase enzyme IIA component; EIIA; EIII; PTS system mannitol-specific EIIA component from Bacillus subtilis (strain 168) (see paper)
25% identity, 65% coverage: 41:142/156 of query aligns to 36:135/143 of C0H3V2

query
sites
C0H3V2
S
 
T
Q
 
E
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D
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Y
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I
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L
 
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E
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E
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S
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T
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F
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M
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G
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A
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H
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D
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L

Query Sequence

>WP_086509854.1 NCBI__GCF_002151265.1:WP_086509854.1
MTLENILPPERALFDVPGGSKKRVLEFFSTFIAQNTPSLDSQEVFGRLIGRERLGSTGIG
NGVAIPHARSPHCHSPVAAFLKLAEPIDFDAIDGEPVDLVFVLLVPEEADDTHLSLLSQV
ASVMNDAETRSQLRKCESQRELHERLIDAIRRQSSA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory