Comparing WP_086510300.1 NCBI__GCF_002151265.1:WP_086510300.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
1us4A Putative glur0 ligand binding core with l-glutamate (see paper)
29% identity, 88% coverage: 32:315/324 of query aligns to 5:295/297 of 1us4A
Sites not aligning to the query:
>WP_086510300.1 NCBI__GCF_002151265.1:WP_086510300.1
MKLTNLTLFVFCTGVTLGASADSDRDSWPSSLTIGTGSQGATYYIYGSGWGNLASEATGA
SFGAEVTGGPVQNVTLVQMGEHEFGMVTTGPAYEAWRGNSELAPGVEHTDIRAVFPMYQT
ALQVIALSGSGISSISDLDGKTVGIGPAGGTGDMYYPQLFEKLGLNVRTRNAGAADQASQ
VQDGLLDAFAFAAGIPVSAFSQLEAQVDVNIFSFSEEEMEVFLEDFPEFSPATIPASAYS
SLDADTSAISLWNFAITHKDMPESLVYEVTKAVMENHERMVQVHGSASETVPENFVENTF
IPWHPGAVRWFEENGYDIPEELRG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory