SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_086511287.1 NCBI__GCF_002151265.1:WP_086511287.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 4 hits to proteins with known functional sites (download)

P9WIB9 Secreted chorismate mutase; CM; *MtCM; EC 5.4.99.5 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 4 papers)
30% identity, 69% coverage: 14:149/197 of query aligns to 9:146/199 of P9WIB9

query
sites
P9WIB9
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Sites not aligning to the query:

2fp2B Secreted chorismate mutase from mycobacterium tuberculosis (see paper)
33% identity, 52% coverage: 50:151/197 of query aligns to 12:112/163 of 2fp2B

query
sites
2fp2B
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E
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I

2ao2B The 2.07 angstrom crystal structure of mycobacterium tuberculosis chorismate mutase reveals unexpected gene duplication and suggests a role in host-pathogen interactions (see paper)
33% identity, 52% coverage: 50:151/197 of query aligns to 14:114/165 of 2ao2B

query
sites
2ao2B
E
 
E
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2ao2A The 2.07 angstrom crystal structure of mycobacterium tuberculosis chorismate mutase reveals unexpected gene duplication and suggests a role in host-pathogen interactions (see paper)
33% identity, 52% coverage: 50:151/197 of query aligns to 14:114/165 of 2ao2A

query
sites
2ao2A
E
 
E
R
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R
L
 
L
D
 
E
V
 
V
A
 
A
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D
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P
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V
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W
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A
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I

Query Sequence

>WP_086511287.1 NCBI__GCF_002151265.1:WP_086511287.1
MSLHRALPIHSGRWLAIALVLLLAGCQTQPPEPPDEDKAAIDRMLVLIDERLDVAPLVAQ
SKWNSGAPIEAPEREAQILDQVAEDAEAAGVDDAFARRFFDKQFEASKQIQRRLHHQWLQ
EGRSPFADPPDLAEEVRPVLDRLTPQLIEALADMQRIAEVEGSGRYLEQRAAELIQDDFD
GEPRDVAIAPLRERFAP

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory