SitesBLAST
Comparing WP_086621990.1 NCBI__GCF_001677335.1:WP_086621990.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3pm9A Crystal structure of a putative dehydrogenase (rpa1076) from rhodopseudomonas palustris cga009 at 2.57 a resolution
45% identity, 95% coverage: 17:476/485 of query aligns to 13:465/465 of 3pm9A
- active site: A149 (= A155), L159 (≠ T165)
- binding flavin-adenine dinucleotide: P69 (= P73), Q70 (= Q74), G71 (= G75), G72 (= G76), N73 (= N77), T74 (≠ S78), G75 (= G79), L76 (≠ M80), G79 (= G83), Q80 (≠ A84), L91 (≠ M97), L133 (= L139), G134 (= G140), A135 (≠ G141), C139 (≠ A145), T140 (= T146), G142 (= G148), G143 (= G149), S146 (= S152), T147 (= T153), A149 (= A155), G150 (= G156), E200 (= E206), G201 (= G207), I205 (= I211), I206 (≠ V212), E423 (= E434)
6lpxA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with 2-oxoglutarate (2-og) (see paper)
37% identity, 94% coverage: 20:474/485 of query aligns to 22:462/466 of 6lpxA
- binding 2-oxoglutaric acid: R333 (= R337), T337 (≠ S341), K348 (≠ Q352), Y379 (≠ F385), H381 (= H387), H388 (= H394), H423 (= H435)
- binding flavin-adenine dinucleotide: W39 (= W37), P75 (= P73), Q76 (= Q74), G77 (= G75), G78 (= G76), N79 (= N77), T80 (≠ S78), G81 (= G79), M82 (= M80), G85 (= G83), S86 (≠ A84), L139 (= L139), G140 (= G140), A141 (≠ G141), C145 (≠ A145), G149 (= G149), N150 (≠ L150), A152 (≠ S152), T153 (= T153), G157 (= G157), G207 (= G207), I212 (≠ V212), E422 (= E434), N459 (= N471)
- binding zinc ion: H381 (= H387), H388 (= H394), E422 (= E434)
6lpuA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with l-2-hydroxyglutarate (l-2-hg) (see paper)
37% identity, 94% coverage: 20:474/485 of query aligns to 22:462/466 of 6lpuA
- binding flavin-adenine dinucleotide: W39 (= W37), P75 (= P73), G77 (= G75), G78 (= G76), N79 (= N77), T80 (≠ S78), G81 (= G79), G85 (= G83), S86 (≠ A84), L139 (= L139), G140 (= G140), A141 (≠ G141), C145 (≠ A145), H146 (≠ T146), G148 (= G148), G149 (= G149), N150 (≠ L150), A152 (≠ S152), T153 (= T153), A155 (= A155), E206 (= E206), G207 (= G207), I211 (= I211), I212 (≠ V212), E422 (= E434), N459 (= N471)
- binding (2s)-2-hydroxypentanedioic acid: R333 (= R337), T337 (≠ S341), K348 (≠ Q352), Y379 (≠ F385), H381 (= H387), H388 (= H394), H423 (= H435)
- binding zinc ion: H381 (= H387), H388 (= H394), E422 (= E434)
6lpqA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-malate (d-mal) (see paper)
37% identity, 94% coverage: 20:474/485 of query aligns to 22:462/466 of 6lpqA
- binding flavin-adenine dinucleotide: W39 (= W37), P75 (= P73), G77 (= G75), G78 (= G76), N79 (= N77), T80 (≠ S78), G81 (= G79), G85 (= G83), S86 (≠ A84), L139 (= L139), G140 (= G140), A141 (≠ G141), C145 (≠ A145), H146 (≠ T146), G149 (= G149), N150 (≠ L150), A152 (≠ S152), T153 (= T153), A155 (= A155), G157 (= G157), E206 (= E206), G207 (= G207), I211 (= I211), I212 (≠ V212), E422 (= E434), N459 (= N471)
- binding d-malate: M82 (= M80), R333 (= R337), T337 (≠ S341), K348 (≠ Q352), Y379 (≠ F385), H381 (= H387), H388 (= H394), E422 (= E434), H423 (= H435)
- binding zinc ion: H381 (= H387), H388 (= H394), E422 (= E434)
6lppA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-2-hydroxyglutarate (d-2-hg) (see paper)
37% identity, 94% coverage: 20:474/485 of query aligns to 22:462/466 of 6lppA
- binding (2R)-2-hydroxypentanedioic acid: R333 (= R337), T337 (≠ S341), K348 (≠ Q352), Y379 (≠ F385), H381 (= H387), H388 (= H394), N390 (≠ H396), H423 (= H435)
- binding flavin-adenine dinucleotide: W39 (= W37), P75 (= P73), G77 (= G75), G78 (= G76), N79 (= N77), T80 (≠ S78), G81 (= G79), M82 (= M80), G85 (= G83), S86 (≠ A84), L139 (= L139), G140 (= G140), A141 (≠ G141), C145 (≠ A145), G149 (= G149), N150 (≠ L150), A152 (≠ S152), T153 (= T153), A155 (= A155), G157 (= G157), G207 (= G207), I212 (≠ V212), E422 (= E434), H423 (= H435)
- binding zinc ion: H381 (= H387), H388 (= H394), E422 (= E434)
6lpnB Crystal structure of human d-2-hydroxyglutarate dehydrogenase in apo form (see paper)
37% identity, 94% coverage: 20:474/485 of query aligns to 23:463/467 of 6lpnB
- binding flavin-adenine dinucleotide: W40 (= W37), P76 (= P73), G78 (= G75), G79 (= G76), N80 (= N77), T81 (≠ S78), G82 (= G79), M83 (= M80), G86 (= G83), S87 (≠ A84), L140 (= L139), A142 (≠ G141), C146 (≠ A145), H147 (≠ T146), G150 (= G149), N151 (≠ L150), A153 (≠ S152), T154 (= T153), G208 (= G207), I212 (= I211), I213 (≠ V212), E423 (= E434), N460 (= N471)
Q8N465 D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens (Human) (see 7 papers)
37% identity, 94% coverage: 20:474/485 of query aligns to 75:515/521 of Q8N465
- S109 (≠ T54) to W: in D2HGA1; uncertain significance; significant loss of catalytic activity; dbSNP:rs142050154
- N127 (≠ V72) to K: in D2HGA1; uncertain significance; complete loss of catalytic activity; dbSNP:rs762857195
- G131 (= G76) to V: in D2HGA1; uncertain significance; complete loss of catalytic activity
- I147 (≠ L94) to S: in D2HGA1; uncertain significance; severe phenotype; almost complete loss of catalytic activity; dbSNP:rs121434361
- M153 (= M100) to T: in D2HGA1; uncertain significance; significant loss of catalytic activity; to V: in D2HGA1; uncertain significance; significant loss of catalytic activity; dbSNP:rs1432270139
- C172 (≠ V119) to Y: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs773735172
- P189 (= P136) to L: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs587783517
- A205 (≠ S152) to V: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs750889931
- A231 (= A178) to V: in D2HGA1; uncertain significance; significant loss of catalytic activity
- G233 (= G180) to S: in D2HGA1; uncertain significance; no effect on catalytic activity; dbSNP:rs374535734
- D375 (≠ N326) to Y: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs267606759
- R386 (= R337) binding (R)-2-hydroxyglutarate; binding (R)-lactate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- T390 (≠ S341) binding (R)-2-hydroxyglutarate; binding (R)-malate; mutation to A: Significantly reduced catalytic activity.
- V399 (≠ A350) to M: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs746519212
- K401 (≠ Q352) binding (R)-2-hydroxyglutarate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- R419 (≠ I373) to H: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs199908032
- A426 (≠ T380) to T: in D2HGA1; uncertain significance; no effect on catalytic activity; dbSNP:rs146578303
- H434 (= H387) binding Zn(2+); mutation to A: Loss of catalytic activity.
- G436 (= G389) to V: slight reduction in catalytic activity
- N439 (= N392) to D: in D2HGA1; uncertain significance; mild phenotype; moderate reduction in catalytic activity; dbSNP:rs121434362
- H441 (= H394) binding Zn(2+); mutation to A: Loss of catalytic activity.
- N443 (≠ H396) binding (R)-2-hydroxyglutarate; mutation to A: Significantly reduced catalytic activity.
- V444 (= V397) to A: in D2HGA1; uncertain significance; severe phenotype; significant reduction in catalytic activity; dbSNP:rs121434360
- A446 (= A399) to V: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs746956176
- E475 (= E434) binding Zn(2+); mutation to A: Loss of catalytic activity.
- H476 (= H435) binding (R)-2-hydroxyglutarate; binding (R)-lactate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- G477 (= G436) to R: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs1453924640
Sites not aligning to the query:
- 15 R → G: in dbSNP:rs4675887
- 169:521 natural variant: Missing (in D2HGA1; uncertain significance)
- 400:521 natural variant: Missing (in D2HGA1; uncertain significance; complete loss of catalytic activity)
P39976 D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
31% identity, 92% coverage: 32:476/485 of query aligns to 55:496/496 of P39976
Sites not aligning to the query:
- 17 modified: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)
P9WIT1 Uncharacterized FAD-linked oxidoreductase Rv2280; EC 1.-.-.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
33% identity, 88% coverage: 49:473/485 of query aligns to 44:453/459 of P9WIT1