SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_089136613.1 NCBI__GCF_002217945.1:WP_089136613.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
26% identity, 87% coverage: 20:219/229 of query aligns to 17:214/215 of 4ymtC

query
sites
4ymtC
G
 
S
G
 
G
L
 
L
W
 
I
T
 
M
T
 
T
V
 
L
E
 
K
I
 
L
A
 
T
A
 
F
V
 
L
A
 
A
L
 
V
V
 
T
L
 
I
G
 
G
L
 
V
I
 
L
L
 
M
G
 
G
V
 
L
I
 
F
L
 
I
G
 
A
V
 
L
L
 
M
R
 
K
T
 
M
F
 
S
P
 
S
N
 
I
R
 
K
L
 
P
L
 
I
R
 
K
L
 
L
V
 
V
L
 
A
R
 
S
L
 
S
Y
 
Y
L
 
I
E
 
E
F
 
V
F
 
I
R
 
R
I
 
G
V
 
T
P
|
P
T
x
L
V
 
L
V
 
V
L
 
Q
L
 
L
F
 
L
L
 
L
F
 
I
Y
 
Y
Y
 
N
I
 
G
L
 
L
P
 
-
K
 
M
Q
 
Q
L
 
F
G
 
G
V
 
M
N
 
N
L
 
I
P
 
P
A
 
A
N
 
F
Q
 
T
V
 
A
A
 
G
T
 
V
L
 
S
V
 
A
F
 
L
A
 
A
L
 
I
W
x
N
T
 
S
A
 
S
A
 
A
E
x
Y
M
 
V
S
 
A
D
 
E
I
 
I
V
 
I
R
 
R
G
 
A
A
 
G
L
 
I
I
 
Q
S
 
A
V
 
V
P
 
D
K
 
P
H
 
G
Q
 
Q
R
 
N
E
 
E
S
 
A
G
 
A
M
 
R
A
 
S
I
 
L
G
 
G
L
 
M
N
 
T
R
 
H
L
 
A
Q
 
M
L
 
A
Y
 
M
R
 
R
Y
 
Y
V
 
V
L
 
I
I
 
I
P
 
P
Q
 
Q
A
 
A
V
 
I
S
 
K
L
 
N
E
 
I
L
 
L
P
 
P
A
 
A
T
 
L
I
 
G
N
 
N
L
x
E
V
 
F
T
 
I
R
 
V
V
x
M
I
 
L
K
|
K
T
x
E
T
 
S
S
 
A
L
 
I
L
 
V
M
 
S
L
 
V
I
 
I
S
 
G
V
 
F
M
 
A
D
 
D
V
 
L
I
 
T
N
 
R
V
 
Q
G
 
A
Q
 
-
Q
 
D
V
 
I
V
 
I
E
 
Q
A
 
S
N
 
V
N
 
T
Q
 
Y
K
 
R
Y
 
Y
P
 
F
T
 
E
G
 
P
V
 
Y
F
 
I
W
 
I
V
 
I
Y
 
A
G
 
A
I
 
I
I
 
Y
F
 
F
V
 
V
M
 
M
Y
 
T
F
 
L
A
 
T
I
 
F
D
 
S
Y
 
K
P
 
L
L
 
L
S
 
S
W
 
L
W
 
F
A
 
E
K
 
R
R
 
R
M
 
L

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
26% identity, 87% coverage: 20:219/229 of query aligns to 17:214/214 of 4ymwC

query
sites
4ymwC
G
 
S
G
 
G
L
 
L
W
 
I
T
 
M
T
 
T
V
 
L
E
 
K
I
 
L
A
 
T
A
 
F
V
 
L
A
 
A
L
 
V
V
 
T
L
 
I
G
 
G
L
 
V
I
 
L
L
 
M
G
 
G
V
 
L
I
 
F
L
 
I
G
 
A
V
 
L
L
 
M
R
 
K
T
 
M
F
 
S
P
 
S
N
 
I
R
 
K
L
 
P
L
 
I
R
 
K
L
 
L
V
 
V
L
 
A
R
 
S
L
 
S
Y
 
Y
L
 
I
E
 
E
F
 
V
F
 
I
R
 
R
I
 
G
V
 
T
P
 
P
T
 
L
V
 
L
V
 
V
L
 
Q
L
 
L
F
 
L
L
 
L
F
 
I
Y
 
Y
Y
 
N
I
 
G
L
 
L
P
 
-
K
 
M
Q
 
Q
L
 
F
G
 
G
V
 
M
N
 
N
L
 
I
P
 
P
A
 
A
N
 
F
Q
 
T
V
 
A
A
 
G
T
 
V
L
 
S
V
 
A
F
 
L
A
 
A
L
 
I
W
x
N
T
 
S
A
 
S
A
 
A
E
x
Y
M
 
V
S
 
A
D
 
E
I
 
I
V
 
I
R
 
R
G
 
A
A
 
G
L
 
I
I
 
Q
S
 
A
V
 
V
P
 
D
K
 
P
H
 
G
Q
 
Q
R
 
N
E
 
E
S
 
A
G
 
A
M
 
R
A
 
S
I
 
L
G
 
G
L
 
M
N
 
T
R
 
H
L
 
A
Q
 
M
L
 
A
Y
 
M
R
 
R
Y
 
Y
V
 
V
L
 
I
I
 
I
P
 
P
Q
 
Q
A
 
A
V
 
I
S
 
K
L
 
N
E
 
I
L
 
L
P
 
P
A
 
A
T
 
L
I
 
G
N
 
N
L
x
E
V
 
F
T
 
I
R
 
V
V
 
M
I
 
L
K
 
K
T
x
E
T
 
S
S
 
A
L
 
I
L
 
V
M
 
S
L
 
V
I
 
I
S
 
G
V
 
F
M
 
A
D
 
D
V
 
L
I
 
T
N
 
R
V
 
Q
G
 
A
Q
 
-
Q
 
D
V
 
I
V
 
I
E
 
Q
A
 
S
N
 
V
N
 
T
Q
 
Y
K
 
R
Y
 
Y
P
 
F
T
 
E
G
 
P
V
 
Y
F
 
I
W
 
I
V
 
I
Y
 
A
G
 
A
I
 
I
I
 
Y
F
 
F
V
 
V
M
 
M
Y
 
T
F
 
L
A
 
T
I
 
F
D
 
S
Y
 
K
P
 
L
L
 
L
S
 
S
W
 
L
W
 
F
A
 
E
K
 
R
R
 
R
M
 
L

Query Sequence

>WP_089136613.1 NCBI__GCF_002217945.1:WP_089136613.1
MAHSGINVLFEGRNLIRLFGGLWTTVEIAAVALVLGLILGVILGVLRTFPNRLLRLVLRL
YLEFFRIVPTVVLLFLFYYILPKQLGVNLPANQVATLVFALWTAAEMSDIVRGALISVPK
HQRESGMAIGLNRLQLYRYVLIPQAVSLELPATINLVTRVIKTTSLLMLISVMDVINVGQ
QVVEANNQKYPTGVFWVYGIIFVMYFAIDYPLSWWAKRMDKKRLERANG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory