SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_089219308.1 NCBI__GCF_900188165.1:WP_089219308.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

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Found no hits to proteins with known functional sites (download)

Query Sequence

>WP_089219308.1 NCBI__GCF_900188165.1:WP_089219308.1
MFTRLPIILLALILLAATLGPWALPWRHDVIDWSAVRVPPGSPGHWLGTDAVGRDLLARA
LAGTRITLLVAAAAAIVSLIFGVAWGAIAGWRGGKVDEVMMRIVDGLYALPFMFVVILLM
VLFGRSILLVFLGIGAVEWLTMARVVRGQVLALRERPFVLAAEAAGAPPITIILRHLLPN
LAGIAIAYLLLTIPQVVMIESFLSFLGLGVQEPATSLGILVKEGADDMDIAPHALLLPGG
ILVAILVSLTLLGERLRDRFA

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SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory