SitesBLAST
Comparing WP_089322140.1 NCBI__GCF_900188395.1:WP_089322140.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4mv4A Crystal structure of biotin carboxylase from haemophilus influenzae in complex with amppcp and mg2 (see paper)
56% identity, 98% coverage: 1:443/450 of query aligns to 1:441/442 of 4mv4A
- active site: K116 (= K116), K159 (= K157), D193 (≠ G194), H206 (= H207), R232 (= R233), T271 (= T272), E273 (= E274), E285 (= E287), N287 (= N289), R289 (= R291), E293 (= E295), R335 (= R335)
- binding phosphomethylphosphonic acid adenylate ester: K159 (= K157), G164 (= G162), M166 (= M167), E198 (= E199), Y200 (≠ L201), L201 (≠ I202), H233 (= H234), L275 (= L276), E285 (= E287)
- binding magnesium ion: E273 (= E274), E285 (= E287)
4mv3A Crystal structure of biotin carboxylase from haemophilus influenzae in complex with amppcp and bicarbonate (see paper)
56% identity, 98% coverage: 1:443/450 of query aligns to 1:438/439 of 4mv3A
- active site: K116 (= K116), K159 (= K157), D190 (≠ G194), H203 (= H207), R229 (= R233), T268 (= T272), E270 (= E274), E282 (= E287), N284 (= N289), R286 (= R291), E290 (= E295), R332 (= R335)
- binding phosphomethylphosphonic acid adenylate ester: K159 (= K157), M163 (= M167), E195 (= E199), Y197 (≠ L201), L198 (≠ I202), E270 (= E274), L272 (= L276), E282 (= E287)
- binding bicarbonate ion: R286 (= R291), Q288 (= Q293), V289 (= V294)
6oi8A Crystal structure of haemophilus influenzae biotin carboxylase complexed with 7-((1r,5s,6s)-6-amino-3-azabicyclo[3.1.0]hexan-3-yl)- 6-(2-chloro-6-(pyridin-3-yl)phenyl)pyrido[2,3-d]pyrimidin-2-amine (see paper)
56% identity, 98% coverage: 1:443/450 of query aligns to 1:439/440 of 6oi8A
- active site: K116 (= K116), K159 (= K157), D191 (≠ G194), H204 (= H207), R230 (= R233), T269 (= T272), E271 (= E274), E283 (= E287), N285 (= N289), R287 (= R291), E291 (= E295), R333 (= R335)
- binding 7-[(1R,5S,6s)-6-amino-3-azabicyclo[3.1.0]hexan-3-yl]-6-[2-chloro-6-(pyridin-3-yl)phenyl]pyrido[2,3-d]pyrimidin-2-amine: I157 (≠ L155), K159 (= K157), M164 (= M167), E196 (= E199), Y198 (≠ L201), L199 (≠ I202), H204 (= H207), Q228 (= Q231), E271 (= E274), L273 (= L276), E283 (= E287), I432 (≠ T436)
2vr1A Crystal structure of biotin carboxylase from e. Coli in complex with atp analog, adpcf2p. (see paper)
56% identity, 98% coverage: 1:443/450 of query aligns to 1:442/444 of 2vr1A
- active site: K116 (= K116), K159 (= K157), D194 (≠ G194), H207 (= H207), R233 (= R233), T272 (= T272), E274 (= E274), E286 (= E287), N288 (= N289), R290 (= R291), E294 (= E295), R336 (= R335)
- binding phosphodifluoromethylphosphonic acid-adenylate ester: K159 (= K157), R165 (= R165), M167 (= M167), Y201 (≠ L201), L202 (≠ I202), E274 (= E274), L276 (= L276), E286 (= E287), N288 (= N289), I435 (≠ T436)
2vpqB Crystal structure of biotin carboxylase from s. Aureus complexed with amppnp (see paper)
55% identity, 97% coverage: 3:440/450 of query aligns to 1:441/448 of 2vpqB
- active site: V116 (≠ Q118), K156 (= K157), H206 (= H207), R232 (= R233), T271 (= T272), E273 (= E274), E287 (= E287), N289 (= N289), R291 (= R291), E295 (= E295), R337 (= R335)
- binding phosphoaminophosphonic acid-adenylate ester: K114 (= K116), I154 (≠ L155), K156 (= K157), G161 (= G162), G163 (= G164), I166 (≠ M167), F200 (≠ L201), I201 (= I202), E273 (= E274), I275 (≠ L276), M286 (≠ I286), E287 (= E287)
- binding magnesium ion: E273 (= E274), E287 (= E287)
6ojhA Crystal structure of haemophilus influenzae biotin carboxylase complexed with (r)-7-(3-aminopyrrolidin-1-yl)-6-(naphthalen-1-yl) pyrido[2,3-d]pyrimidin-2-amine
57% identity, 98% coverage: 1:443/450 of query aligns to 1:444/445 of 6ojhA
- active site: K116 (= K116), K159 (= K157), D196 (≠ G194), H209 (= H207), R235 (= R233), T274 (= T272), E276 (= E274), E288 (= E287), N290 (= N289), R292 (= R291), E296 (= E295), R338 (= R335)
- binding calcium ion: E276 (= E274), E288 (= E287), N290 (= N289)
- binding 7-[(3R)-3-aminopyrrolidin-1-yl]-6-(naphthalen-1-yl)pyrido[2,3-d]pyrimidin-2-amine: K159 (= K157), M169 (= M167), E201 (= E199), Y203 (≠ L201), L204 (≠ I202), H236 (= H234), L278 (= L276), E288 (= E287), I437 (≠ T436)
P43873 Biotin carboxylase; Acetyl-coenzyme A carboxylase biotin carboxylase subunit A; EC 6.3.4.14 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see paper)
57% identity, 98% coverage: 1:443/450 of query aligns to 1:444/448 of P43873
- K116 (= K116) binding ATP
- K159 (= K157) binding ATP
- EKYL 201:204 (≠ EKLI 199:202) binding ATP
- E276 (= E274) binding ATP; binding Mg(2+)
- E288 (= E287) binding ATP; binding Mg(2+)
- N290 (= N289) binding Mg(2+)
4mv1A Crystal structure of biotin carboxylase from haemophilus influenzae in complex with adp and phosphate (see paper)
55% identity, 98% coverage: 1:443/450 of query aligns to 1:430/430 of 4mv1A
- active site: K116 (= K116), K159 (= K157), D182 (≠ E188), H195 (= H207), R221 (= R233), T260 (= T272), E262 (= E274), E274 (= E287), N276 (= N289), R278 (= R291), E282 (= E295), R324 (= R335)
- binding adenosine-5'-diphosphate: K159 (= K157), E187 (= E199), K188 (= K200), Y189 (≠ L201), L190 (≠ I202), L264 (= L276)
- binding phosphate ion: K224 (= K236), R278 (= R291), Q280 (= Q293), V281 (= V294), E282 (= E295)
2vqdA Crystal structure of biotin carboxylase from pseudomonas aeruginosa complexed with ampcp (see paper)
53% identity, 98% coverage: 1:443/450 of query aligns to 1:444/447 of 2vqdA
- active site: K116 (= K116), K159 (= K157), P196 (≠ G194), H209 (= H207), R235 (= R233), T274 (= T272), E276 (= E274), E288 (= E287), N290 (= N289), R292 (= R291), E296 (= E295), R338 (= R335)
- binding phosphomethylphosphonic acid adenosyl ester: K116 (= K116), I157 (≠ L155), K159 (= K157), G164 (= G162), G166 (= G164), F203 (≠ L201), L204 (≠ I202), H209 (= H207), Q233 (= Q231), H236 (= H234), L278 (= L276), E288 (= E287), I437 (≠ T436)
- binding magnesium ion: E276 (= E274), E288 (= E287)
3rupA Crystal structure of e.Coli biotin carboxylase in complex with two adp and two ca ions (see paper)
56% identity, 98% coverage: 1:443/450 of query aligns to 1:444/444 of 3rupA
- active site: K116 (= K116), K159 (= K157), D196 (≠ G194), H209 (= H207), R235 (= R233), T274 (= T272), E276 (= E274), E288 (= E287), N290 (= N289), R292 (= R291), E296 (= E295), R338 (= R335)
- binding adenosine-5'-diphosphate: Y82 (= Y82), G83 (= G83), K116 (= K116), K159 (= K157), G164 (= G162), G164 (= G162), G165 (= G163), G166 (= G164), R167 (= R165), M169 (= M167), F193 (= F191), E201 (= E199), K202 (= K200), Y203 (≠ L201), L204 (≠ I202), H209 (= H207), Q233 (= Q231), H236 (= H234), K238 (= K236), L278 (= L276), E288 (= E287), R292 (= R291), V295 (= V294), E296 (= E295), R338 (= R335), D382 (= D380), I437 (≠ T436)
- binding calcium ion: E87 (= E87), E276 (= E274), E288 (= E287), E288 (= E287), N290 (= N289)
3g8cA Crystal structure of biotin carboxylase in complex with biotin, bicarbonate, adp and mg ion (see paper)
56% identity, 98% coverage: 1:443/450 of query aligns to 1:444/444 of 3g8cA
- active site: K116 (= K116), K159 (= K157), D196 (≠ G194), H209 (= H207), R235 (= R233), T274 (= T272), E276 (= E274), E288 (= E287), N290 (= N289), R292 (= R291), E296 (= E295), R338 (= R335)
- binding adenosine-5'-diphosphate: I157 (≠ L155), K159 (= K157), G164 (= G162), M169 (= M167), E201 (= E199), K202 (= K200), Y203 (≠ L201), L204 (≠ I202), Q233 (= Q231), H236 (= H234), L278 (= L276), E288 (= E287), I437 (≠ T436)
- binding bicarbonate ion: K238 (= K236), R292 (= R291), Q294 (= Q293), V295 (= V294), E296 (= E295)
- binding biotin: Y82 (= Y82), F84 (= F84), R292 (= R291), V295 (= V294), R338 (= R335), D382 (= D380)
- binding magnesium ion: E276 (= E274), E288 (= E287)
8uz2C E. Coli acetyl-coa carboxylase, narrow helical local reconstruction, 3.18 angstrom
56% identity, 98% coverage: 1:443/450 of query aligns to 1:444/446 of 8uz2C
- binding adenosine-5'-diphosphate: K116 (= K116), K159 (= K157), G164 (= G162), G165 (= G163), G166 (= G164), M169 (= M167), H209 (= H207), Q233 (= Q231), H236 (= H234), L278 (= L276), E288 (= E287), I437 (≠ T436)
- binding magnesium ion: E276 (= E274), E288 (= E287)
- binding : R356 (≠ K354), I410 (≠ F408)
6oi9A Crystal structure of e. Coli biotin carboxylase complexed with 7-[3- (aminomethyl)pyrrolidin-1-yl]-6-(2,6-dichlorophenyl)pyrido[2,3- d]pyrimidin-2-amine (see paper)
56% identity, 98% coverage: 1:443/450 of query aligns to 1:444/446 of 6oi9A
- active site: E276 (= E274), E288 (= E287), N290 (= N289), E296 (= E295), R338 (= R335)
- binding 7-[(3S)-3-(aminomethyl)pyrrolidin-1-yl]-6-(2,6-dichlorophenyl)pyrido[2,3-d]pyrimidin-2-amine: K159 (= K157), M169 (= M167), E201 (= E199), Y203 (≠ L201), L204 (≠ I202), H209 (= H207), Q233 (= Q231), H236 (= H234), E276 (= E274), L278 (= L276), E288 (= E287), I437 (≠ T436)
2w71A Crystal structure of biotin carboxylase from e. Coli in complex with the imidazole-pyrimidine inhibitor (see paper)
56% identity, 98% coverage: 1:443/450 of query aligns to 1:444/446 of 2w71A
- active site: K116 (= K116), K159 (= K157), D196 (≠ G194), H209 (= H207), R235 (= R233), T274 (= T272), E276 (= E274), E288 (= E287), N290 (= N289), R292 (= R291), E296 (= E295), R338 (= R335)
- binding 4-[1-(2,6-dichlorobenzyl)-2-methyl-1H-imidazol-4-yl]pyrimidin-2-amine: K159 (= K157), Y203 (≠ L201), L204 (≠ I202), H209 (= H207), Q233 (= Q231), H236 (= H234), L278 (= L276), I437 (≠ T436)
2w70A Crystal structure of biotin carboxylase from e. Coli in complex with the amino-thiazole-pyrimidine fragment (see paper)
56% identity, 98% coverage: 1:443/450 of query aligns to 1:444/446 of 2w70A
- active site: K116 (= K116), K159 (= K157), D196 (≠ G194), H209 (= H207), R235 (= R233), T274 (= T272), E276 (= E274), E288 (= E287), N290 (= N289), R292 (= R291), E296 (= E295), R338 (= R335)
- binding 4-(2-amino-1,3-thiazol-4-yl)pyrimidin-2-amine: I157 (≠ L155), K159 (= K157), G166 (= G164), M169 (= M167), E201 (= E199), Y203 (≠ L201), L204 (≠ I202), L278 (= L276)
2w6zA Crystal structure of biotin carboxylase from e. Coli in complex with the 3-(3-methyl-but-2-enyl)-3h-purin-6-ylamine fragment (see paper)
56% identity, 98% coverage: 1:443/450 of query aligns to 1:444/446 of 2w6zA
- active site: K116 (= K116), K159 (= K157), D196 (≠ G194), H209 (= H207), R235 (= R233), T274 (= T272), E276 (= E274), E288 (= E287), N290 (= N289), R292 (= R291), E296 (= E295), R338 (= R335)
- binding 3-(3-methylbut-2-en-1-yl)-3H-purin-6-amine: K159 (= K157), Y203 (≠ L201), L204 (≠ I202), L278 (= L276)
2w6qA Crystal structure of biotin carboxylase from e. Coli in complex with the triazine-2,4-diamine fragment (see paper)
56% identity, 98% coverage: 1:443/450 of query aligns to 1:444/446 of 2w6qA
- active site: K116 (= K116), K159 (= K157), D196 (≠ G194), H209 (= H207), R235 (= R233), T274 (= T272), E276 (= E274), E288 (= E287), N290 (= N289), R292 (= R291), E296 (= E295), R338 (= R335)
- binding 6-(2-phenoxyethoxy)-1,3,5-triazine-2,4-diamine: I157 (≠ L155), K159 (= K157), E201 (= E199), K202 (= K200), Y203 (≠ L201), L204 (≠ I202), H236 (= H234), L278 (= L276)
2w6pA Crystal structure of biotin carboxylase from e. Coli in complex with 5-methyl-6-phenyl-quinazoline-2,4-diamine (see paper)
56% identity, 98% coverage: 1:443/450 of query aligns to 1:444/446 of 2w6pA
- active site: K116 (= K116), K159 (= K157), D196 (≠ G194), H209 (= H207), R235 (= R233), T274 (= T272), E276 (= E274), E288 (= E287), N290 (= N289), R292 (= R291), E296 (= E295), R338 (= R335)
- binding 5-methyl-6-phenylquinazoline-2,4-diamine: K159 (= K157), Y203 (≠ L201), L204 (≠ I202), Q233 (= Q231), H236 (= H234), L278 (= L276), I437 (≠ T436)
2w6mA Crystal structure of biotin carboxylase from e. Coli in complex with amino-oxazole fragment series (see paper)
56% identity, 98% coverage: 1:443/450 of query aligns to 1:444/446 of 2w6mA
- active site: K116 (= K116), K159 (= K157), D196 (≠ G194), H209 (= H207), R235 (= R233), T274 (= T272), E276 (= E274), E288 (= E287), N290 (= N289), R292 (= R291), E296 (= E295), R338 (= R335)
- binding (2-amino-1,3-oxazol-5-yl)-(3-bromophenyl)methanone: I157 (≠ L155), K159 (= K157), M169 (= M167), E201 (= E199), K202 (= K200), Y203 (≠ L201), H236 (= H234), L278 (= L276), I437 (≠ T436)
2v5aA Crystal structure of biotin carboxylase from e.Coli in complex with potent inhibitor 3 (see paper)
56% identity, 98% coverage: 1:443/450 of query aligns to 1:444/446 of 2v5aA
- active site: K116 (= K116), K159 (= K157), D196 (≠ G194), H209 (= H207), R235 (= R233), T274 (= T272), E276 (= E274), E288 (= E287), N290 (= N289), R292 (= R291), E296 (= E295), R338 (= R335)
- binding 7-(2,5-dihydropyrrol-1-yl)-6-phenyl-pyrido[6,5-d]pyrimidin-2-amine: I157 (≠ L155), K159 (= K157), M169 (= M167), E201 (= E199), Y203 (≠ L201), L204 (≠ I202), Q233 (= Q231), H236 (= H234), L278 (= L276), I437 (≠ T436)
Query Sequence
>WP_089322140.1 NCBI__GCF_900188395.1:WP_089322140.1
MFKKILIANRGEIAVRIIRTCKELGIKTVAIYSTADKDSLPVFLADEAICIGGEKPASSY
LNIPAIISAAEISGADAIHPGYGFLSENPGFAEVCRACGIEFIGPSSETMVVMGDKAQAR
SIAKKAGIPIVPGSDVVKNAEEALQIAKEIGFPVLVKAAHGGGGRGMRIIESEEGAKELI
ETAMAEAEAAFGNGEVYVEKLILKPRHIEIQVIADKHGNVIIFGERECSLQRRHQKVLEE
APSPFVDENLRQKLYEAARKLAQYIKYEGAGTVEFLVDEDKNFYFIEMNTRIQVEHPVTE
MITGKDLIALQIKTAEGEKLEMADPELKGHAIEFRINVEDYKKNFRPTPGKVEKLLLPGG
FGTRVDTHIYEGYTIPPYYDSLIAKLIVHGENRNDAIKRGKRALSEFFIEGNIKTTIPFH
LKLIEDENFLKGDLDTKVLEDKILERILSN
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory