Comparing WP_090271761.1 NCBI__GCF_900105005.1:WP_090271761.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
46% identity, 97% coverage: 1:228/236 of query aligns to 1:226/233 of P75957
7mdyC Lolcde nucleotide-bound
46% identity, 95% coverage: 5:228/236 of query aligns to 2:223/226 of 7mdyC
7arlD Lolcde in complex with lipoprotein and adp (see paper)
46% identity, 94% coverage: 5:227/236 of query aligns to 2:222/222 of 7arlD
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
46% identity, 95% coverage: 5:228/236 of query aligns to 4:225/229 of 7v8iD
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
45% identity, 96% coverage: 4:230/236 of query aligns to 2:221/223 of 2pclA
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
45% identity, 95% coverage: 5:228/236 of query aligns to 3:223/226 of 5xu1B
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
43% identity, 95% coverage: 5:229/236 of query aligns to 1:227/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
42% identity, 95% coverage: 5:229/236 of query aligns to 1:227/230 of 1l2tA
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
40% identity, 95% coverage: 4:228/236 of query aligns to 2:223/615 of 5lilA
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
40% identity, 95% coverage: 4:228/236 of query aligns to 2:223/592 of 5lj7A
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
42% identity, 88% coverage: 22:228/236 of query aligns to 18:224/650 of 5ws4A
8g4cB Bceabs atpgs high res tm (see paper)
36% identity, 94% coverage: 5:227/236 of query aligns to 3:223/248 of 8g4cB
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
40% identity, 86% coverage: 25:228/236 of query aligns to 23:224/648 of P75831
7tchB Bceab e169q variant atp-bound conformation (see paper)
36% identity, 94% coverage: 5:227/236 of query aligns to 2:222/245 of 7tchB
8i6rB Cryo-em structure of pseudomonas aeruginosa ftse(e163q)x/envc complex with atp in peptidisc (see paper)
40% identity, 95% coverage: 5:228/236 of query aligns to 1:218/222 of 8i6rB
8iddA Cryo-em structure of mycobacterium tuberculosis atp bound ftsex/ripc complex in peptidisc (see paper)
42% identity, 86% coverage: 26:229/236 of query aligns to 20:221/225 of 8iddA
Sites not aligning to the query:
8igqA Cryo-em structure of mycobacterium tuberculosis adp bound ftsex/ripc complex in peptidisc (see paper)
42% identity, 86% coverage: 26:229/236 of query aligns to 20:221/227 of 8igqA
Sites not aligning to the query:
A5U7B7 Cell division ATP-binding protein FtsE from Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (see 2 papers)
42% identity, 86% coverage: 26:229/236 of query aligns to 19:220/229 of A5U7B7
7w78A Heme exporter hrtba in complex with mg-amppnp (see paper)
39% identity, 85% coverage: 24:224/236 of query aligns to 22:214/218 of 7w78A
Sites not aligning to the query:
7w79A Heme exporter hrtba in complex with mn-amppnp (see paper)
39% identity, 85% coverage: 24:224/236 of query aligns to 22:214/216 of 7w79A
Sites not aligning to the query:
>WP_090271761.1 NCBI__GCF_900105005.1:WP_090271761.1
MSDDVLRLERIGKIFNQGTPLESTVLHDIDLRLGRGELTALIGPSGSGKSTLLNLIGLLD
VPSAGELYLQGQPTRDSDDATRTHLRNQALGFVFQFHHLISAFSVLENVLMPLIIRSGRP
STEAIDLARGLLREVGLEKMADKKPTEISGGQQQRVAIARALITRPPLLLADEPTGNLDT
KTAESVFDLFRRINSQFGCSILVVTHDPRLAASCPRTVQLVDGRIVSDETGNLTSA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory