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Comparing WP_090275928.1 NCBI__GCF_900105005.1:WP_090275928.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4zz7A Crystal structure of methylmalonate-semialdehyde dehydrogenase (dddc) from oceanimonas doudoroffii (see paper)
81% identity, 99% coverage: 1:489/496 of query aligns to 1:489/489 of 4zz7A
- active site: N149 (= N149), K172 (= K172), L246 (= L246), C280 (= C280), E382 (= E382), A462 (= A462)
- binding nicotinamide-adenine-dinucleotide: T146 (= T146), P147 (= P147), F148 (= F148), N149 (= N149), K172 (= K172), E175 (= E175), K205 (= K205), V208 (= V208), F222 (= F222), V223 (= V223), G224 (= G224), S225 (= S225), I228 (= I228), L246 (= L246), G247 (= G247), C280 (= C280), E382 (= E382), F384 (= F384)
5tjrD X-ray crystal structure of a methylmalonate semialdehyde dehydrogenase from pseudomonas sp. Aac (see paper)
68% identity, 99% coverage: 4:494/496 of query aligns to 3:468/468 of 5tjrD
- active site: N144 (= N149), K167 (= K172), L241 (= L246), C270 (= C280), E356 (= E382), A436 (= A462)
- binding adenosine-5'-diphosphate: I140 (= I145), T141 (= T146), F143 (= F148), K167 (= K172), E170 (= E175), K200 (= K205), F217 (= F222), S220 (= S225), I223 (= I228)
4iymC Crystal structure of putative methylmalonate-semialdehyde dehydrogenase from sinorhizobium meliloti 1021 complexed with NAD, target 011934
53% identity, 98% coverage: 1:488/496 of query aligns to 4:491/491 of 4iymC
- active site: N153 (= N149), K176 (= K172), F250 (≠ L246), C284 (= C280), E386 (= E382), Q466 (≠ A462)
- binding nicotinamide-adenine-dinucleotide: I149 (= I145), T150 (= T146), P151 (= P147), F152 (= F148), N153 (= N149), F154 (= F150), K176 (= K172), K209 (= K205), V212 (= V208), F226 (= F222), V227 (= V223), G228 (= G224), S229 (= S225), I232 (= I228), G251 (= G247), C284 (= C280), E386 (= E382), F388 (= F384)
P42412 Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis (strain 168) (see 3 papers)
44% identity, 97% coverage: 1:483/496 of query aligns to 4:483/487 of P42412
- C36 (≠ K32) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-160; A-287; A-351 and A-413.
- R107 (= R103) mutation to L: At least 50-fold decrease of the second-order rate constant for the acylation step.
- A150 (≠ T146) binding NAD(+)
- F152 (= F148) binding NAD(+)
- C160 (≠ L156) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-36; A-287; A-351 and A-413.
- K176 (= K172) binding NAD(+)
- E179 (= E175) binding NAD(+)
- R180 (= R176) binding NAD(+)
- S229 (= S225) binding NAD(+)
- T251 (≠ G247) binding NAD(+)
- R283 (= R279) mutation to L: At least 50-fold decrease of the second-order rate constant for the acylation step.
- C287 (≠ L283) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-36; A-160; A-351 and A-413.
- C351 (≠ V348) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-36; A-160; A-287 and A-413.
- E382 (= E382) binding NAD(+)
- C413 (= C413) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-36; A-160; A-287 and A-351.
1t90A Crystal structure of methylmalonate semialdehyde dehydrogenase from bacillus subtilis
44% identity, 97% coverage: 1:483/496 of query aligns to 2:481/484 of 1t90A
- active site: N151 (= N149), K174 (= K172), L248 (= L246), C282 (= C280), E380 (= E382), A460 (= A462)
- binding nicotinamide-adenine-dinucleotide: I147 (= I145), A148 (≠ T146), P149 (= P147), F150 (= F148), N151 (= N149), W159 (= W157), K174 (= K172), E177 (= E175), R178 (= R176), H207 (≠ K205), V225 (= V223), G226 (= G224), S227 (= S225), V230 (≠ I228), L248 (= L246), T249 (≠ G247), C282 (= C280), E380 (= E382), F382 (= F384)
5izdA Wild-type glyceraldehyde dehydrogenase from thermoplasma acidophilum in complex with NADP
32% identity, 90% coverage: 1:448/496 of query aligns to 1:448/494 of 5izdA
- active site: N149 (= N149), K172 (= K172), E247 (≠ L246), C281 (= C280), E381 (= E382)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: L145 (≠ I145), T146 (= T146), W148 (≠ F148), K172 (= K172), P173 (= P173), S174 (= S174), S175 (≠ E175), R204 (≠ D204), G205 (vs. gap), G209 (≠ V208), D210 (= D209), G225 (= G224), S226 (= S225), T229 (≠ I228)
Sites not aligning to the query:
1bpwA Betaine aldehyde dehydrogenase from cod liver (see paper)
31% identity, 93% coverage: 19:477/496 of query aligns to 37:492/503 of 1bpwA
- active site: N166 (= N149), K189 (= K172), E263 (≠ L246), C297 (= C280), E400 (= E382), E477 (≠ A462)
- binding nicotinamide-adenine-dinucleotide: I162 (= I145), L163 (≠ T146), W165 (≠ F148), N166 (= N149), K189 (= K172), G221 (≠ D204), G225 (≠ V208), T240 (≠ V223), G241 (= G224), S242 (= S225), T245 (≠ I228), E263 (≠ L246), L264 (≠ G247), C297 (= C280), E400 (= E382), F402 (= F384), F466 (= F449)
P56533 4-trimethylaminobutyraldehyde dehydrogenase; TMABA-DH; TMABADH; Aldehyde dehydrogenase family 9 member A1; Betaine aldehyde dehydrogenase; BADH; EC 1.2.1.47; EC 1.2.1.3 from Gadus morhua subsp. callarias (Baltic cod) (Gadus callarias) (see paper)
31% identity, 93% coverage: 19:477/496 of query aligns to 37:492/503 of P56533
4pz2B Structure of zm aldh2-6 (rf2f) in complex with NAD (see paper)
36% identity, 91% coverage: 7:458/496 of query aligns to 14:467/494 of 4pz2B
- active site: N159 (= N149), K182 (= K172), E258 (≠ L246), C292 (= C280), E392 (= E382)
- binding nicotinamide-adenine-dinucleotide: I155 (= I145), I156 (≠ T146), P157 (= P147), W158 (≠ F148), N159 (= N149), M164 (≠ V154), K182 (= K172), A184 (≠ S174), E185 (= E175), G215 (≠ D204), G219 (≠ V208), F233 (= F222), T234 (≠ V223), G235 (= G224), S236 (= S225), V239 (≠ I228), E258 (≠ L246), L259 (≠ G247), C292 (= C280), E392 (= E382), F394 (= F384)
Sites not aligning to the query:
2d4eC Crystal structure of the hpcc from thermus thermophilus hb8
33% identity, 95% coverage: 6:477/496 of query aligns to 29:501/515 of 2d4eC
- active site: N173 (= N149), K196 (= K172), E271 (≠ L246), C305 (= C280), E409 (= E382), E486 (≠ A462)
- binding nicotinamide-adenine-dinucleotide: I169 (= I145), T170 (= T146), P171 (= P147), W172 (≠ F148), K196 (= K172), A198 (≠ S174), G229 (≠ D204), G233 (≠ V208), A234 (≠ D209), T248 (≠ V223), G249 (= G224), E250 (≠ S225), T253 (≠ I228), E271 (≠ L246), L272 (≠ G247), C305 (= C280), E409 (= E382), F411 (= F384), F475 (= F449)
6vr6D Structure of aldh9a1 complexed with NAD+ in space group p1 (see paper)
30% identity, 93% coverage: 16:477/496 of query aligns to 24:482/493 of 6vr6D
- active site: N156 (= N149), E253 (≠ L246), C287 (= C280), E467 (≠ A462)
- binding nicotinamide-adenine-dinucleotide: I152 (= I145), G153 (≠ T146), W155 (≠ F148), K179 (= K172), A212 (≠ K205), G215 (≠ V208), Q216 (≠ D209), F229 (= F222), G231 (= G224), S232 (= S225), T235 (≠ I228), I239 (= I232)
P49189 4-trimethylaminobutyraldehyde dehydrogenase; TMABA-DH; TMABALDH; Aldehyde dehydrogenase E3 isozyme; Aldehyde dehydrogenase family 9 member A1; Formaldehyde dehydrogenase; Gamma-aminobutyraldehyde dehydrogenase; R-aminobutyraldehyde dehydrogenase; EC 1.2.1.47; EC 1.2.1.3; EC 1.2.1.46; EC 1.2.1.19 from Homo sapiens (Human) (see 2 papers)
30% identity, 93% coverage: 16:477/496 of query aligns to 25:483/494 of P49189
- C116 (≠ N107) to S: in allele ALDH9A1*2
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed; alternate
- 2 modified: N-acetylserine; in 4-trimethylaminobutyraldehyde dehydrogenase, N-terminally processed
4fr8A Crystal structure of human aldehyde dehydrogenase-2 in complex with nitroglycerin (see paper)
33% identity, 95% coverage: 13:483/496 of query aligns to 23:490/493 of 4fr8A
- active site: N162 (= N149), K185 (= K172), Q261 (≠ L246), C295 (= C280), E392 (= E382), E469 (≠ D459)
- binding nicotinamide-adenine-dinucleotide: I158 (= I145), I159 (≠ T146), W161 (≠ F148), K185 (= K172), G218 (≠ D204), G222 (≠ V208), A223 (≠ D209), F236 (= F222), G238 (= G224), S239 (= S225), I242 (= I228), Q342 (≠ H328), K345 (= K331), E392 (= E382), F394 (= F384)
- binding propane-1,2,3-triyl trinitrate: F163 (= F150), L166 (≠ M153), W170 (= W157), F289 (≠ G274), S294 (≠ R279), C295 (= C280), D450 (≠ P441), F452 (≠ P443)
4fr8C Crystal structure of human aldehyde dehydrogenase-2 in complex with nitroglycerin (see paper)
33% identity, 95% coverage: 13:483/496 of query aligns to 26:493/496 of 4fr8C
- active site: N165 (= N149), K188 (= K172), Q264 (≠ L246), C298 (= C280), E395 (= E382), E472 (≠ D459)
- binding nicotinamide-adenine-dinucleotide: I161 (= I145), I162 (≠ T146), W164 (≠ F148), K188 (= K172), G221 (≠ D204), G225 (≠ V208), A226 (≠ D209), F239 (= F222), G241 (= G224), S242 (= S225), I245 (= I228), Q345 (≠ H328), E395 (= E382), F397 (= F384)
P05091 Aldehyde dehydrogenase, mitochondrial; ALDH class 2; ALDH-E2; ALDHI; EC 1.2.1.3 from Homo sapiens (Human) (see 5 papers)
33% identity, 95% coverage: 13:483/496 of query aligns to 47:514/517 of P05091
- E337 (≠ S299) to V: in dbSNP:rs1062136
- E496 (≠ A462) to K: in allele ALDH2*3; dbSNP:rs769724893
- E504 (≠ K473) to K: in AMEDS; allele ALDH2*2; drastic reduction of enzyme activity; dbSNP:rs671
Sites not aligning to the query:
5l13A Structure of aldh2 in complex with 2p3 (see paper)
33% identity, 95% coverage: 13:483/496 of query aligns to 24:491/494 of 5l13A
- active site: N163 (= N149), K186 (= K172), E262 (≠ L246), C296 (= C280), E393 (= E382), E470 (≠ D459)
- binding 2,3,5-trimethyl-6-propyl-7H-furo[3,2-g][1]benzopyran-7-one: F164 (= F150), M168 (≠ V154), W171 (= W157), F290 (≠ G274), C295 (≠ R279), C296 (= C280), C297 (≠ M281), D451 (≠ P441), F453 (≠ P443)
4kwgA Crystal structure analysis of aldh2+aldib13 (see paper)
33% identity, 95% coverage: 13:483/496 of query aligns to 24:491/494 of 4kwgA
- active site: N163 (= N149), K186 (= K172), E262 (≠ L246), C296 (= C280), E393 (= E382), E470 (≠ D459)
- binding 7-bromo-5-methyl-1H-indole-2,3-dione: F164 (= F150), M168 (≠ V154), C295 (≠ R279), C296 (= C280), C297 (≠ M281), D451 (≠ P441), F453 (≠ P443)
4kwfA Crystal structure analysis of aldh2+aldib33 (see paper)
33% identity, 95% coverage: 13:483/496 of query aligns to 24:491/494 of 4kwfA
- active site: N163 (= N149), K186 (= K172), E262 (≠ L246), C296 (= C280), E393 (= E382), E470 (≠ D459)
- binding 1-benzyl-1H-indole-2,3-dione: F164 (= F150), M168 (≠ V154), W171 (= W157), E262 (≠ L246), C295 (≠ R279), C296 (= C280), C297 (≠ M281), D451 (≠ P441), F453 (≠ P443), F459 (= F449)
3sz9A Crystal structure of human aldh2 modified with the beta-elimination product of aldi-3; 1-(4-ethylbenzene)prop-2-en-1-one (see paper)
33% identity, 95% coverage: 13:483/496 of query aligns to 24:491/494 of 3sz9A
- active site: N163 (= N149), K186 (= K172), E262 (≠ L246), C296 (= C280), E393 (= E382), E470 (≠ D459)
- binding 1-(4-ethylphenyl)propan-1-one: F164 (= F150), C295 (≠ R279), C296 (= C280), D451 (≠ P441), F453 (≠ P443), F459 (= F449)
3injA Human mitochondrial aldehyde dehydrogenase complexed with agonist alda-1 (see paper)
33% identity, 95% coverage: 13:483/496 of query aligns to 24:491/494 of 3injA
- active site: N163 (= N149), K186 (= K172), E262 (≠ L246), C296 (= C280), E393 (= E382), E470 (≠ D459)
- binding N-(1,3-benzodioxol-5-ylmethyl)-2,6-dichlorobenzamide: M118 (≠ R103), F164 (= F150), L167 (≠ M153), F286 (≠ G270), F290 (≠ G274), D451 (≠ P441), F453 (≠ P443)
Query Sequence
>WP_090275928.1 NCBI__GCF_900105005.1:WP_090275928.1
MKTIGHLINGTIDTQSSRTQDVFNPSTGEVSKKLAVASKPTVEAAIAAAQAAYPAWRNTP
PLKRAKVMFRFKELLERNADEICRLIGEEHGKIAHDAMGELQRGIENVEYACGAPELLKG
EFSKNAGPAIDSWSEFQPLGVVAGITPFNFPAMVPLWMYPMAIVCGNTFVLKPSERNPSA
VLFIAELLHEAGLPPGVLNVVNGDKEAVDVLLSDARVQAVSFVGSTPIAEYIYTTASAHG
KRCQALGGAKNHAIVMPDADMDNAVSALVGAAFGSSGERCMALSVAVAVGDEAADSLISK
MTEQMKSLKVGAFSDKSNDFGPLITRAHQEKVTGYISSAEQQGATLVVDGRQPAVAGYDK
GFYVGGTLIDNVTAEMTCYKEEIFGPVLLVMRVNSMEEAMQLINDHEYGNGTCIFTRDGE
AARYFSDNIMVGMVGINVPLPVPVAYHSFGGWKRSLFGDLHAYGPDAVRFYTKRKTITQR
WPSAGVREGAQFSFPS
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory