SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_090438443.1 NCBI__GCF_900100495.1:WP_090438443.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8wm8B Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with nitrate (see paper)
38% identity, 63% coverage: 118:324/329 of query aligns to 70:265/265 of 8wm8B

query
sites
8wm8B
Q
 
Q
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I
F
 
L
T
 
S
S
 
S
L
 
L
Y
 
G
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R
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V
M
 
G
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L
G
 
G
F
 
F
V
 
S
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L
A
 
A
S
 
A
L
 
I
L
 
A
A
 
G
I
 
I
P
 
I
L
 
L
G
 
G
I
 
I
V
 
L
C
 
I
G
 
G
L
 
V
S
 
N
K
 
P
P
 
L
I
 
V
Y
 
Y
T
 
N
A
 
A
V
 
V
N
 
D
P
 
P
L
 
I
I
 
F
Q
 
Q
V
 
V
F
 
L
K
 
R
P
 
T
V
 
V
S
 
P
P
 
P
L
 
L
A
 
A
W
 
W
L
 
L
P
 
P
L
 
I
V
 
S
T
 
L
M
 
-
V
 
-
V
 
-
S
 
-
A
 
A
V
 
A
Y
 
F
S
 
Q
S
 
Q
A
 
A
D
 
N
P
 
P
L
 
-
F
 
-
A
 
-
K
 
-
S
 
-
F
 
-
I
 
-
T
 
S
S
 
A
A
 
I
I
 
F
T
 
V
V
 
I
A
 
F
L
 
I
C
 
T
C
 
S
L
 
I
W
 
W
P
 
P
T
 
I
V
 
L
I
 
L
N
 
N
T
 
T
T
 
T
V
 
V
G
 
G
V
 
V
A
 
Q
N
 
Q
L
 
I
D
 
P
K
 
Q
D
 
D
L
 
Y
Q
 
I
N
 
N
V
 
V
S
 
A
R
 
K
V
 
V
L
 
L
S
 
R
L
 
L
S
 
K
P
 
G
L
 
V
S
 
K
H
 
Y
V
 
F
R
 
F
R
 
K
I
 
I
V
 
V
L
 
F
P
 
P
A
 
A
A
 
T
I
 
V
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P
M
 
Y
I
 
I
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F
T
 
T
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G
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L
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R
L
 
I
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G
L
 
I
A
 
G
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L
G
 
S
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W
M
x
L
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A
L
 
I
I
 
V
A
|
A
A
 
A
E
 
E
M
 
M
L
 
L
A
 
V
Q
 
G
N
 
G
P
 
V
G
 
G
L
 
I
G
 
G
K
 
S
F
 
F
I
 
I
W
 
W
D
 
D
E
 
A
F
 
Y
Q
 
N
N
 
T
G
 
T
S
 
T
S
 
E
N
 
T
S
 
N
L
 
L
G
 
S
R
 
E
I
 
I
M
 
I
V
 
L
A
 
A
V
 
L
I
 
I
V
 
Y
I
 
V
G
 
G
L
 
L
I
 
V
G
 
G
F
 
L
V
 
L
L
 
L
D
 
D
R
 
R
L
 
L
M
 
V
L
 
G
L
 
F
L
 
V
Q
 
A
R
 
S
R
 
K
A
 
V
S
 
V
W
 
A
D
 
D
K
 
Q

Query Sequence

>WP_090438443.1 NCBI__GCF_900100495.1:WP_090438443.1
MSNPAVAQPIQDTLKSARSAALKRWLPSVLMPVIGILAFLLFWQISAGSIDTSLGKFPGP
TQVASQFGALVDEHLREQDKADAFYERQEKRNAEKLAKDPEAEVSIRPYTGKPTFFKQIF
TSLYTVMTGFVIASLLAIPLGIVCGLSKPIYTAVNPLIQVFKPVSPLAWLPLVTMVVSAV
YSSADPLFAKSFITSAITVALCCLWPTVINTTVGVANLDKDLQNVSRVLSLSPLSHVRRI
VLPAAIPMIFTGLRLSLATGWMVLIAAEMLAQNPGLGKFIWDEFQNGSSNSLGRIMVAVI
VIGLIGFVLDRLMLLLQRRASWDKNADLR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory