SitesBLAST
Comparing WP_090439602.1 NCBI__GCF_900100495.1:WP_090439602.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 6 hits to proteins with known functional sites (download)
8gy3A Cryo-em structure of membrane-bound aldehyde dehydrogenase from gluconobacter oxydans
50% identity, 95% coverage: 12:426/437 of query aligns to 8:428/440 of 8gy3A
- binding heme c: Y52 (= Y56), C53 (= C57), C56 (= C60), H57 (= H61), S84 (≠ T85), I86 (= I87), W97 (= W98), F102 (= F103), L117 (= L118), F121 (= F122), F126 (= F127), R163 (= R164), C203 (= C203), C206 (= C206), H207 (= H207), A232 (= A233), P233 (= P234), L235 (= L236), W245 (= W246), Y253 (= Y254), L254 (= L255), G263 (= G264), S264 (≠ V265), M269 (= M270), Y292 (≠ F292), C337 (= C335), C340 (= C338), H341 (= H339), P353 (= P351), L355 (= L353), N358 (= N356), N359 (≠ S357), V372 (≠ I370), I377 (= I375), G382 (= G380), Q383 (≠ I381), I386 (≠ V384), M388 (= M386), F391 (= F389)
- binding ubiquinone-10: E55 (≠ T59), T76 (= T77), F78 (= F79), Y118 (= Y119), P119 (= P120), I160 (≠ F161), G166 (≠ Q167), Q167 (≠ A168), F169 (vs. gap), W170 (= W170), H202 (= H202), R210 (= R210), L213 (= L213)
7w2jC Cryo-em structure of membrane-bound fructose dehydrogenase from gluconobacter japonicus
40% identity, 83% coverage: 45:405/437 of query aligns to 1:366/418 of 7w2jC
- binding heme c: C13 (= C57), C16 (= C60), H17 (= H61), T42 (= T85), I44 (= I87), Y55 (≠ W98), L75 (= L118), Y76 (= Y119), A78 (= A121), M79 (≠ F122), R122 (= R164), H161 (= H202), C162 (= C203), C165 (= C206), H166 (= H207), A191 (= A233), P192 (= P234), R223 (≠ V265), P227 (≠ K269), M228 (= M270), V289 (≠ A334), C290 (= C335), C293 (= C338), H294 (= H339), Y305 (≠ V349), Y306 (≠ R350), P307 (= P351), L309 (= L353), N312 (= N356), T313 (≠ S357), T314 (≠ A358), D322 (≠ T366), I327 (≠ V371), V331 (≠ I375), R333 (≠ L377), I340 (≠ V384), M342 (= M386), P343 (= P387), F345 (= F389)
8jejC Cryo-em structure of na-dithionite reduced membrane-bound fructose dehydrogenase from gluconobacter japonicus
39% identity, 83% coverage: 45:405/437 of query aligns to 1:380/413 of 8jejC
- binding heme c: C13 (= C57), C16 (= C60), H17 (= H61), T42 (= T85), I44 (= I87), F60 (= F103), L64 (≠ M107), L75 (= L118), Y76 (= Y119), M79 (≠ F122), P80 (= P123), Y84 (≠ F127), R122 (= R164), C162 (= C203), C165 (= C206), H166 (= H207), I186 (= I228), W189 (= W231), A191 (= A233), P192 (= P234), I194 (≠ L236), W205 (= W246), Y213 (= Y254), R223 (≠ V265), M228 (= M270), V303 (≠ A334), C304 (= C335), C307 (= C338), H308 (= H339), Y320 (≠ R350), P321 (= P351), L323 (= L353), T327 (≠ S357), T328 (≠ A358), D336 (≠ T366), I341 (≠ V371), V345 (≠ I375), R347 (≠ L377), I354 (≠ V384), M356 (= M386), F359 (= F389), I376 (= I401)
- binding ubiquinone-10: M36 (≠ F79), P77 (= P120), S124 (≠ L166), W128 (= W170), C165 (= C206), L173 (≠ G214)
Sites not aligning to the query:
Q47945 Alcohol dehydrogenase (quinone), cytochrome c subunit; ADH; Alcohol dehydrogenase (quinone), subunit II; Cytochrome c-553; Cytochrome c553; Ethanol:Q2 reductase; G3-ADH subunit II; Quinohemoprotein-cytochrome c complex; Ubiquinol oxidase; EC 1.1.5.5 from Gluconobacter oxydans (strain 621H) (Gluconobacter suboxydans) (see paper)
34% identity, 83% coverage: 44:407/437 of query aligns to 43:415/478 of Q47945
Sites not aligning to the query:
- 1:36 signal peptide
- 37 modified: Pyrrolidone carboxylic acid
8gy2B Cryo-em structure of membrane-bound alcohol dehydrogenase from gluconobacter oxydans
34% identity, 83% coverage: 44:407/437 of query aligns to 5:377/433 of 8gy2B
- binding heme c: C18 (= C57), C21 (= C60), H22 (= H61), T46 (= T85), I48 (= I87), Y59 (≠ W98), L68 (≠ M107), R73 (≠ S112), V79 (≠ L118), Y80 (= Y119), M83 (≠ F122), F88 (= F127), R126 (= R164), H165 (= H202), C166 (= C203), C169 (= C206), H170 (= H207), I201 (≠ F232), A202 (= A233), P203 (= P234), L205 (= L236), W216 (= W246), F224 (≠ Y254), A234 (≠ V265), V235 (≠ A266), F236 (≠ A267), F236 (≠ A267), M239 (= M270), N301 (≠ A334), C302 (= C335), C305 (= C338), H306 (= H339), M316 (≠ V349), F317 (≠ R350), P318 (= P351), L320 (= L353), P324 (≠ S357), G342 (≠ I375), S352 (≠ N383), V354 (= V384), M356 (= M386), F359 (= F389), M375 (≠ L405)
- binding ubiquinone-10: C21 (= C60), L34 (≠ Y73), P39 (= P78), P81 (= P120), L129 (≠ Q167), W132 (= W170), E168 (≠ A205), R173 (= R210), I197 (= I228), D241 (= D272)
Sites not aligning to the query:
8hddB Complex structure of catalytic, small, and a partial electron transfer subunits from burkholderia cepacia fad glucose dehydrogenase (see paper)
32% identity, 23% coverage: 328:426/437 of query aligns to 23:121/121 of 8hddB
- binding protoporphyrin ix containing fe: C30 (= C335), C33 (= C338), H34 (= H339), Y46 (≠ R350), P47 (= P351), T54 (≠ A358), V66 (≠ I370), I67 (≠ V371), R73 (≠ L377), I80 (≠ V384), M82 (= M386), P83 (= P387)
Query Sequence
>WP_090439602.1 NCBI__GCF_900100495.1:WP_090439602.1
MIKRIYIGLAILVVLGAALFFALVWRPTIAPIAPGSVAGFPAELVAKGEALAGAGYCATC
HTVKGGQPYAGGYGMPTPFGVIYSTNITPDPDSGIGRWSEAAFMRAMHEGVSRDGSHLYP
AFPYDYFTKVADEDVRALYAFLMTREPVSAPAQRNTLPFPFNIRVLQAGWKLLFMDQGRY
RPVAGKSEAWNRGAYLAEGLSHCAACHTPRNVLGAEKAADDSYAGAMIEGWFAPALTAAN
TTPLPWTQDELFTYLRSGATALHGVAAGKMSDVVHDLGRLPDADIQAISVYFADLNGSSA
LKTGSDEALAKALATSALGSRLEPDAGAVLYWAACGSCHYNSATTPLSVRPELALNSALT
AATPDTFIHIVMAGIGLEEGIPNVLMPAFSQALNDGEIAKIADYLRRTRTELPAWEQLEA
RVAAIRRESAGSADLSP
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory