Comparing WP_090442755.1 NCBI__GCF_900100495.1:WP_090442755.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
4z9nB Abc transporter / periplasmic binding protein from brucella ovis with glutathione bound
62% identity, 92% coverage: 28:342/342 of query aligns to 7:324/324 of 4z9nB
1xt8B Crystal structure of cysteine-binding protein from campylobacter jejuni at 2.0 a resolution (see paper)
29% identity, 63% coverage: 28:243/342 of query aligns to 6:213/251 of 1xt8B
4zv1A An ancestral arginine-binding protein bound to arginine (see paper)
29% identity, 63% coverage: 35:250/342 of query aligns to 3:211/226 of 4zv1A
4zv2A An ancestral arginine-binding protein bound to glutamine (see paper)
29% identity, 63% coverage: 35:250/342 of query aligns to 3:209/225 of 4zv2A
5t0wA Crystal structure of the ancestral amino acid-binding protein anccdt- 1, a precursor of cyclohexadienyl dehydratase
30% identity, 63% coverage: 27:243/342 of query aligns to 1:207/229 of 5t0wA
2vhaA Debp (see paper)
27% identity, 63% coverage: 25:239/342 of query aligns to 4:220/276 of 2vhaA
2ia4B Crystal structure of novel amino acid binding protein from shigella flexneri
27% identity, 63% coverage: 25:239/342 of query aligns to 5:221/278 of 2ia4B
6svfA Crystal structure of the p235gk mutant of argbp from t. Maritima (see paper)
27% identity, 64% coverage: 29:247/342 of query aligns to 3:210/229 of 6svfA
8ovoA X-ray structure of the sf-iglusnfr-s72a in complex with l-aspartate
27% identity, 63% coverage: 25:239/342 of query aligns to 2:218/503 of 8ovoA
2yjpA Crystal structure of the solute receptors for l-cysteine of neisseria gonorrhoeae (see paper)
24% identity, 66% coverage: 26:250/342 of query aligns to 1:217/247 of 2yjpA
3k4uE Crystal structure of putative binding component of abc transporter from wolinella succinogenes dsm 1740 complexed with lysine
29% identity, 62% coverage: 35:245/342 of query aligns to 3:204/234 of 3k4uE
5eyfB Crystal structure of solute-binding protein from enterococcus faecium with bound glutamate
27% identity, 56% coverage: 60:250/342 of query aligns to 38:220/243 of 5eyfB
6h2tA Glnh bound to glu, mycobacterium tuberculosis (see paper)
32% identity, 43% coverage: 13:158/342 of query aligns to 29:173/288 of 6h2tA
Sites not aligning to the query:
6h20A Glnh bound to asn, mycobacterium tuberculosis (see paper)
32% identity, 43% coverage: 13:158/342 of query aligns to 28:172/287 of 6h20A
Sites not aligning to the query:
6h1uA Glnh bound to asp, mycobacterium tuberculosis (see paper)
32% identity, 43% coverage: 13:158/342 of query aligns to 28:172/287 of 6h1uA
Sites not aligning to the query:
2v25A Structure of the campylobacter jejuni antigen peb1a, an aspartate and glutamate receptor with bound aspartate (see paper)
24% identity, 62% coverage: 29:239/342 of query aligns to 3:207/231 of 2v25A
3vvfA Crystal structure of ttc0807 complexed with arginine (see paper)
24% identity, 66% coverage: 28:252/342 of query aligns to 9:222/241 of 3vvfA
3vveA Crystal structure of ttc0807 complexed with lysine (see paper)
24% identity, 66% coverage: 28:252/342 of query aligns to 9:222/241 of 3vveA
3vvdA Crystal structure of ttc0807 complexed with ornithine (see paper)
24% identity, 66% coverage: 28:252/342 of query aligns to 9:222/241 of 3vvdA
3vv5A Crystal structure of ttc0807 complexed with (s)-2-aminoethyl-l- cysteine (aec) (see paper)
24% identity, 66% coverage: 28:252/342 of query aligns to 5:218/237 of 3vv5A
>WP_090442755.1 NCBI__GCF_900100495.1:WP_090442755.1
MKMVKSTLAVLTTAAVLGVSGFAQAGATLDAVQKKGFVQCGISDGLPGFSYADEKGNYLG
LDVDVCRAVAAAVFGDATKVKYSPLTAKERFTALQSGEIDMLSRNTTWTSSRDAALGLNF
TGTNYYDGQGFLVNKKLGVSSAKELDGATVCIQAGTTTELNLSDYFRANGLKYTPITYDT
SDESATSLESGRCDVLTSDQSQLYAQRIKLAAPADYVVLPEVISKEPLGPVVRQGDEEWF
DIVRWSLFAMLNAEELGIDSKNVEEQAKTTKNPDIARLLGTEGEFGKDLKLPKDWAVQIV
KQVGNYAESFERNVGAGSDLKIERGLNALWNKGGLQYAPPVR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory