SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_090443471.1 NCBI__GCF_900100495.1:WP_090443471.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

3nojA The structure of hmg/cha aldolase from the protocatechuate degradation pathway of pseudomonas putida (see paper)
39% identity, 83% coverage: 16:191/211 of query aligns to 28:206/235 of 3nojA

query
sites
3nojA
L
 
L
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Y
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C
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A

A5W059 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase; HMG/CHA aldolase; Oxaloacetate decarboxylase; OAA decarboxylase; EC 4.1.3.17; EC 4.1.1.112 from Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1) (see paper)
39% identity, 83% coverage: 16:191/211 of query aligns to 29:207/238 of A5W059

query
sites
A5W059
L
 
L
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G
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V
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A
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T
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E
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A

Query Sequence

>WP_090443471.1 NCBI__GCF_900100495.1:WP_090443471.1
MSTYDIDAAAQRAKALGSSTLYEASGLPTAVDPAIRPVWRGAFIAAPAYPLECSPGDNLA
LHLALERAPKGCVLVVSTGNFIAGYWGEVLTVAAQAAGVVGLVIDGGVRDIQAIERLGFP
VFSRGVSVKGTVKATAPSVGQPVLFNGAQVAAGDLVVADDDGIVIIPLAEVERTLDEGMA
RFDKETRMMAALREGRTTVELMGLARQEVAQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory