SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_090447154.1 NCBI__GCF_900100495.1:WP_090447154.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
28% identity, 56% coverage: 86:211/224 of query aligns to 151:275/285 of 7cagA

query
sites
7cagA
S
 
S
F
 
L
A
 
A
G
 
I
L
 
V
L
 
V
I
 
L
A
 
A
S
x
E
V
 
V
L
 
W
F
x
K
N
 
T
L
 
T
P
 
P
F
 
F
A
 
M
I
 
A
Q
 
L
P
 
L
M
 
L
Q
 
L
R
 
A
A
 
G
F
 
L
E
 
A
A
 
L
I
 
V
P
 
P
R
 
Q
E
 
D
V
 
L
R
 
L
E
 
N
A
 
A
A
 
A
R
 
Q
C
 
V
C
 
D
G
 
G
L
 
A
S
 
G
P
 
P
W
 
W
R
 
K
V
 
R
L
 
L
R
 
T
R
 
K
I
 
V
E
 
I
L
 
L
P
 
P
L
 
M
A
 
I
W
 
K
P
 
P
G
 
A
I
 
I
L
 
L
S
 
V
A
 
A
L
 
L
V
 
L
L
 
F
T
 
-
F
 
-
A
 
-
H
x
R
T
 
T
L
 
L
G
x
D
E
 
A
F
 
F
-
 
R
-
 
I
-
 
F
-
 
D
G
 
N
V
 
I
V
 
Y
L
 
I
M
 
L
V
 
T
G
 
G
G
 
G
S
 
S
I
 
-
P
 
-
G
 
N
E
 
D
T
 
T
R
 
G
T
 
S
I
 
V
A
 
S
I
 
I
A
 
L
I
 
G
Y
 
Y
D
 
D
R
 
N
V
 
L
Q
 
F
A
 
K
F
 
A
D
 
F
D
 
N
Q
 
V
A
 
G
A
 
L
G
 
G
V
 
S
M
 
A
S
 
I
A
 
S
V
 
V
L
 
L
L
 
I
L
 
F
I
 
L
S
 
S
L
 
V
A
 
A
A
 
I
I
 
I
G
 
A
L
 
F
S
 
I
Y
 
Y

Query Sequence

>WP_090447154.1 NCBI__GCF_900100495.1:WP_090447154.1
MDWPALLLSLQLAFWTMLILLPLGVWIGRKLAWSRFRGKSLVEALLALPLVLPPTVLGFY
LLLALGADSPLGRAYQSLFGAQLTFSFAGLLIASVLFNLPFAIQPMQRAFEAIPREVREA
ARCCGLSPWRVLRRIELPLAWPGILSALVLTFAHTLGEFGVVLMVGGSIPGETRTIAIAI
YDRVQAFDDQAAGVMSAVLLLISLAAIGLSYFATARLARSQTHD

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory