Comparing WP_090447535.1 NCBI__GCF_900100495.1:WP_090447535.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4rqoB Crystal structure of l-serine dehydratase from legionella pneumophila (see paper)
47% identity, 100% coverage: 1:284/284 of query aligns to 1:277/448 of 4rqoB
Sites not aligning to the query:
2iafA Crystal structure of a fragment (residues 11 to 161) of l-serine dehydratase from legionella pneumophila
42% identity, 49% coverage: 17:156/284 of query aligns to 1:136/140 of 2iafA
>WP_090447535.1 NCBI__GCF_900100495.1:WP_090447535.1
MAISVFDLFKIGIGPSSSHTVGPMRAAALFVGALRERRLLERVRRIEVRLYGSLSATGVG
HGSDNAVIMGLMGEWPDSIDPSQIGPRIEALRGSCELALDGRLPIAFDWQRDMLLLEENL
PYHPNAMTLTAFSAAGDPLHGDTYYSVGGGFVVDAEQAASGSLDQDHTQLPYDFSSAAEL
LQLCRQHGLRVSQLMLENEKAWRSEAEIRSGLMRLWQAMRDCVDNGLRHEGTLPGGLQVK
RRAAKLHRSLQEMSKPNVIGSTLSGMEWVNLFALAVNEENAAGG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory