Comparing WP_092053756.1 NCBI__GCF_900111775.1:WP_092053756.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
37% identity, 87% coverage: 4:216/245 of query aligns to 1:220/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
37% identity, 87% coverage: 4:216/245 of query aligns to 2:221/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
37% identity, 87% coverage: 4:216/245 of query aligns to 2:221/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
37% identity, 87% coverage: 4:216/245 of query aligns to 2:221/344 of 6cvlD
P0A9R7 Cell division ATP-binding protein FtsE from Escherichia coli (strain K12) (see paper)
38% identity, 82% coverage: 16:217/245 of query aligns to 14:217/222 of P0A9R7
8w6iD Cryo-em structure of escherichia coli str k12 ftsex complex with atp- gamma-s in peptidisc
38% identity, 82% coverage: 16:217/245 of query aligns to 14:217/219 of 8w6iD
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
31% identity, 80% coverage: 25:219/245 of query aligns to 22:220/240 of 4ymuJ
Sites not aligning to the query:
8hd0A Cell divisome spg hydrolysis machinery ftsex-envc
38% identity, 82% coverage: 16:217/245 of query aligns to 14:217/218 of 8hd0A
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
32% identity, 85% coverage: 12:219/245 of query aligns to 25:222/242 of 3c4jA
Sites not aligning to the query:
3c41J Abc protein artp in complex with amp-pnp/mg2+
32% identity, 85% coverage: 12:219/245 of query aligns to 25:222/242 of 3c41J
Sites not aligning to the query:
2olkA Abc protein artp in complex with adp-beta-s
32% identity, 85% coverage: 12:219/245 of query aligns to 25:222/242 of 2olkA
Sites not aligning to the query:
2oljA Abc protein artp in complex with adp/mg2+
32% identity, 85% coverage: 12:219/245 of query aligns to 25:222/242 of 2oljA
Sites not aligning to the query:
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
35% identity, 82% coverage: 16:217/245 of query aligns to 15:218/223 of 2pclA
8i6rB Cryo-em structure of pseudomonas aeruginosa ftse(e163q)x/envc complex with atp in peptidisc (see paper)
38% identity, 76% coverage: 30:216/245 of query aligns to 28:216/222 of 8i6rB
Sites not aligning to the query:
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
36% identity, 90% coverage: 1:221/245 of query aligns to 1:227/648 of P75831
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
33% identity, 87% coverage: 4:216/245 of query aligns to 3:218/230 of 6z4wA
A0A0H2ZM82 Cell division ATP-binding protein FtsE from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
33% identity, 87% coverage: 4:216/245 of query aligns to 3:218/230 of A0A0H2ZM82
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
33% identity, 87% coverage: 4:216/245 of query aligns to 3:218/229 of 6z67B
8igqA Cryo-em structure of mycobacterium tuberculosis adp bound ftsex/ripc complex in peptidisc (see paper)
35% identity, 84% coverage: 11:216/245 of query aligns to 11:218/227 of 8igqA
8iddA Cryo-em structure of mycobacterium tuberculosis atp bound ftsex/ripc complex in peptidisc (see paper)
35% identity, 84% coverage: 11:216/245 of query aligns to 11:218/225 of 8iddA
>WP_092053756.1 NCBI__GCF_900111775.1:WP_092053756.1
MTPLYELSDIEHHREGRTVLAIDRLELLPGRFYALTGANGAGKSTLLHLLALLDRPSRGE
LRIDGQSLPGSNRHLYRLRREITLVHQAVFLLSGSVADNLAFGLKLRGLSRRERNRRALW
ALQTVGLGDFGERRANRLSGGESRRVALARALALKPRVLLLDEPTTGLDESSAAAFEGLL
AGLRDQGLSLVMASHDRALVQRLGAEEIRLAEGRILGRPLAGSTQHRLAVAGSSLCLNPS
KMPER
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory