Comparing WP_092345287.1 NCBI__GCF_900107645.1:WP_092345287.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4petA Crystal structure of a trap periplasmic solute binding protein from colwellia psychrerythraea (cps_0129, target efi-510097) with bound calcium and pyruvate (see paper)
34% identity, 81% coverage: 51:363/385 of query aligns to 2:317/329 of 4petA
5cm6A Crystal structure of a trap periplasmic solute binding protein from pseudoalteromonas atlantica t6c(patl_2292, target efi-510180) with bound sodium and pyruvate
34% identity, 81% coverage: 51:362/385 of query aligns to 1:321/331 of 5cm6A
Q5SK82 Lactate-binding periplasmic protein TTHA0766; ABC transporter, solute-binding protein; Extracytoplasmic solute receptor protein TTHA0766; TRAP transporter lactate-binding subunit P from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see paper)
33% identity, 73% coverage: 49:330/385 of query aligns to 30:318/361 of Q5SK82
Sites not aligning to the query:
2zzwA Crystal structure of a periplasmic substrate binding protein in complex with zinc and lactate (see paper)
33% identity, 73% coverage: 51:330/385 of query aligns to 1:287/330 of 2zzwA
2zzvA Crystal structure of a periplasmic substrate binding protein in complex with calcium and lactate (see paper)
33% identity, 73% coverage: 51:330/385 of query aligns to 1:287/330 of 2zzvA
7ug8B Crystal structure of a solute receptor from synechococcus cc9311 in complex with alpha-ketovaleric and calcium
30% identity, 85% coverage: 52:378/385 of query aligns to 4:328/330 of 7ug8B
Q3J1R2 Alpha-keto acid-binding periplasmic protein TakP; Extracytoplasmic solute receptor protein TakP; TRAP transporter alpha-keto acid-binding subunit P; TRAP-T family sorbitol/mannitol transporter, periplasmic binding protein, SmoM from Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.) (Rhodobacter sphaeroides) (see paper)
28% identity, 85% coverage: 52:378/385 of query aligns to 31:355/365 of Q3J1R2
2hzlB Crystal structures of a sodium-alpha-keto acid binding subunit from a trap transporter in its closed forms (see paper)
28% identity, 85% coverage: 50:378/385 of query aligns to 1:327/337 of 2hzlB
4yicA Crystal structure of a trap transporter solute binding protein (ipr025997) from bordetella bronchiseptica rb50 (bb0280, target efi- 500035) with bound picolinic acid
29% identity, 82% coverage: 49:363/385 of query aligns to 1:317/344 of 4yicA
7e9yA Crystal structure of elacco1 (see paper)
35% identity, 47% coverage: 51:231/385 of query aligns to 1:182/563 of 7e9yA
Sites not aligning to the query:
4pe3A Crystal structure of a trap periplasmic solute binding protein from rhodobacter sphaeroides (rsph17029_3620, target efi-510199), apo open structure (see paper)
34% identity, 49% coverage: 72:259/385 of query aligns to 19:208/315 of 4pe3A
Sites not aligning to the query:
4xf5A Crystal structure of a trap periplasmic solute binding protein from chromohalobacter salexigens dsm 3043 (csal_0678), target efi-501078, with bound (s)-(+)-2-amino-1-propanol.
23% identity, 80% coverage: 53:359/385 of query aligns to 3:306/317 of 4xf5A
4uabA Crystal structure of a trap periplasmic solute binding protein from chromohalobacter salexigens dsm 3043 (csal_0678), target efi-501078, with bound ethanolamine (see paper)
23% identity, 80% coverage: 53:359/385 of query aligns to 2:305/315 of 4uabA
4n6dA Crystal structure of a trap periplasmic solute binding protein from desulfovibrio salexigens dsm2638 (desal_3247), target efi-510112, phased with i3c, open complex, c-terminus of symmetry mate bound in ligand binding site (see paper)
23% identity, 70% coverage: 72:342/385 of query aligns to 22:287/319 of 4n6dA
4pgpA Crystal structure of a trap periplasmic solute binding protein from desulfovibrio alaskensis g20 (dde_0634, target efi-510120) with bound 3-indole acetic acid (see paper)
23% identity, 75% coverage: 72:360/385 of query aligns to 21:308/308 of 4pgpA
Sites not aligning to the query:
4pgnA Crystal structure of a trap periplasmic solute binding protein from desulfovibrio alaskensis g20 (dde_0634, target efi-510120) with bound indole pyruvate (see paper)
23% identity, 75% coverage: 72:360/385 of query aligns to 21:308/308 of 4pgnA
Sites not aligning to the query:
4napD Crystal structure of a trap periplasmic solute binding protein from desulfovibrio alaskensis g20 (dde_0634), target efi-510102, with bound d-tryptophan (see paper)
23% identity, 75% coverage: 72:360/385 of query aligns to 21:308/310 of 4napD
Sites not aligning to the query:
4x8rA Crystal structure of a trap periplasmic solute binding protein from rhodobacter sphaeroides (rsph17029_2138, target efi-510205) with bound glucuronate
30% identity, 45% coverage: 181:353/385 of query aligns to 131:304/304 of 4x8rA
Sites not aligning to the query:
4magA Crystal structure of the periplasmic sialic acid binding protein from vibrio cholerea (see paper)
27% identity, 76% coverage: 56:347/385 of query aligns to 5:271/307 of 4magA
Sites not aligning to the query:
7a5qB Crystal structure of vcsiap bound to sialic acid (see paper)
27% identity, 76% coverage: 56:347/385 of query aligns to 5:271/299 of 7a5qB
>WP_092345287.1 NCBI__GCF_900107645.1:WP_092345287.1
MKKIKLFIGLILILTLALAPNAFAAKREKFGADKRHGEVKKELRTIKTSSEKFKWKMVMP
WSKGLLFYDVAQHFADSVKLASGGRLDIKLFSAGELVGAMESFDAVSKGQADIGHDWPGY
WKGKNEAFVAFASVPMGLDAEGYNIWLFERGGLEMMQEMYGRYNLFALPGGNVGQELGLF
SNKKASKIEDFKGMRVRTAGWYMDILTNLGASVTPLPGGEVYLALERGVIDAAEFSTPAM
NYPMGFDDITKYVIQPGVHQPSCQSAFFINQDSYNKLPDDLKWILDIAAKETQLWSNAWA
EDLNAKAVKLFKEKVEFVRMDEASITAFAKASHEYLEGLKAKYPDVKKVMDSQDQFKADF
ADWREERGGIAPWPYADFAGGKHKQ
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory