Comparing WP_092348024.1 NCBI__GCF_900107645.1:WP_092348024.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
P0AFM2 Glycine betaine/proline betaine-binding periplasmic protein; GBBP from Escherichia coli (strain K12) (see 2 papers)
39% identity, 92% coverage: 24:334/339 of query aligns to 25:325/330 of P0AFM2
Sites not aligning to the query:
1r9qA Structure analysis of prox in complex with proline betaine (see paper)
39% identity, 92% coverage: 24:334/339 of query aligns to 4:304/309 of 1r9qA
>WP_092348024.1 NCBI__GCF_900107645.1:WP_092348024.1
MKRILMILLLLSLTVPAFADSQKPGKGTKVQPARATWNTGYFQEALVRTGLKELGYNVKK
PKELTNPLFYQSLALGDLDYWTNGWFPMHDAQMPKDFYSKGEKVGYVAKSGGLQGYLVSK
KEVEKFNIKSLDDFKRPEVKAAFDANGDGKADLTACPAGWACEGVIAHHMEVYGLEDDIN
LIKAAYSASMADSLARYNSGGPAFFYTWAPNWTIFKFMPGKDVMWINVPEIKPTEAQQSS
IERLTATGIEGAVSDPVKLGFVAADIQIVANKKFLAANPAAKEFFRVFNLPLSDINEQNT
KMQDGEKSAKDIDRHVKEWIAKNQDKWDGWLAAARNAAM
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory