Comparing WP_092350543.1 NCBI__GCF_900107645.1:WP_092350543.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
7ndrD Crystal structure of tphc in an open conformation (see paper)
18% identity, 79% coverage: 61:309/317 of query aligns to 41:287/293 of 7ndrD
7ndsA Crystal structure of tphc in a closed conformation (see paper)
18% identity, 79% coverage: 61:309/317 of query aligns to 41:287/294 of 7ndsA
Sites not aligning to the query:
2f5xB Structure of periplasmic binding protein bugd (see paper)
26% identity, 52% coverage: 121:284/317 of query aligns to 103:264/300 of 2f5xB
Sites not aligning to the query:
>WP_092350543.1 NCBI__GCF_900107645.1:WP_092350543.1
MILLLLTLFLNISNSFAFEAHKTVCMVPAKPGGGLAQTCQLLTQSLFSANLLDEPMSTKY
RPGGIGTVAYNYVVGVHNDDPNLIIAASSGSVLNLATHKFGHYTVNDVRWLGALGADYGA
IAVRKEAPWNTLDELLSALRKKPLAISGGGSIGSQDWMKMASLVKTAGIDPKTIRYVAFE
GGGEALAALYSGHVQVFSGDISDLNTAFNQHQIKVLAVFSPDRLTGNFSTIPTAKEQGYP
VEWKIWRGYYMGAGVSDEAYNWWVNSLRRLIKTEEFIQQREQLGLLPLSLIGSEFEQFVH
DSIKQYRQLAIDIGVLP
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory