SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_092484452.1 NCBI__GCF_900115975.1:WP_092484452.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8y4wA Sialic acid bound form of tripartite atp-independent periplasmic (trap) transporter from fusobacterium nucleatum.
34% identity, 82% coverage: 10:142/163 of query aligns to 6:138/612 of 8y4wA

query
sites
8y4wA
K
 
K
L
 
L
E
 
E
E
 
E
I
 
W
F
 
L
A
 
G
V
 
G
V
 
S
L
 
L
A
 
F
F
 
I
A
 
G
M
 
M
T
 
F
A
 
V
I
 
I
I
 
L
F
 
V
I
 
M
Q
 
Q
V
 
I
F
 
F
S
 
S
R
 
R
S
 
Q
V
 
I
L
 
F
G
 
N
D
 
S
S
 
P
L
 
L
S
 
I
W
 
W
S
 
S
E
 
E
E
 
E
L
 
L
G
 
S
R
 
R
Y
 
L
I
 
I
F
 
F
V
 
V
W
 
Y
M
 
V
T
 
G
F
 
L
I
 
L
G
 
G
A
 
V
S
 
S
V
 
M
A
 
G
L
 
I
Q
 
R
R
 
S
G
 
Q
A
 
Q
H
 
H
L
 
I
G
 
M
I
 
I
D
 
D
A
 
F
L
 
L
V
 
Y
Q
 
A
A
 
K
L
 
F
P
 
P
K
 
K
K
 
S
L
 
M
Q
 
Q
N
 
K
I
 
I
F
 
I
A
 
F
L
 
T
V
 
I
T
 
I
Y
 
Q
I
 
I
F
 
L
I
 
I
F
 
L
L
 
A
L
 
C
L
 
L
L
 
I
V
 
F
M
 
F
I
 
L
K
 
Y
E
 
F
G
 
G
I
 
Y
S
 
D
L
 
L
V
 
F
E
 
I
H
 
K
T
 
K
G
 
E
M
 
E
Q
 
I
R
 
E
S
 
I
P
 
V
A
 
S
M
 
L
R
 
G
M
 
I
P
 
S
M
 
M
S
 
K
W
 
W
A
 
M
Y
 
Y
L
 
L
A
 
A
I
 
L
P
 
P
V
 
L
S
 
I
A
 
T
V
 
L
L
 
L
M
 
M
I
 
L
V
 
V
H
 
R

Sites not aligning to the query:

Query Sequence

>WP_092484452.1 NCBI__GCF_900115975.1:WP_092484452.1
MTRINEIILKLEEIFAVVLAFAMTAIIFIQVFSRSVLGDSLSWSEELGRYIFVWMTFIGA
SVALQRGAHLGIDALVQALPKKLQNIFALVTYIFIFLLLLVMIKEGISLVEHTGMQRSPA
MRMPMSWAYLAIPVSAVLMIVHTIYKIISGVKELAAGEGGNGA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory