Comparing WP_093396490.1 NCBI__GCF_900114975.1:WP_093396490.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
6aa8E Crystal structure of (s)-3-hydroxybutyryl-coenzymea dehydrogenase from clostridium acetobutylicum complexed with NAD+ (see paper)
44% identity, 95% coverage: 4:282/293 of query aligns to 1:279/281 of 6aa8E
4kugA Crystal structure of 3-hydroxybutylryl-coa dehydrogenase with NAD from clostridium butyricum
43% identity, 96% coverage: 3:282/293 of query aligns to 1:280/282 of 4kugA
4kuhA Crystal structure of 3-hydroxybutylryl-coa dehydrogenase with acetoacetyl-coa from clostridium butyricum
43% identity, 96% coverage: 3:282/293 of query aligns to 1:280/280 of 4kuhA
4pzeA Crystal structure of (s)-3-hydroxybutyryl-coa dehydrogenase paah1 in complex with acetoacetyl-coa (see paper)
42% identity, 96% coverage: 2:282/293 of query aligns to 1:281/283 of 4pzeA
4pzdA Crystal structure of (s)-3-hydroxybutyryl-coa dehydrogenase paah1 in complex with NAD+ (see paper)
42% identity, 96% coverage: 2:282/293 of query aligns to 1:281/283 of 4pzdA
P00348 Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial; HCDH; L-3-hydroxyacyl CoA dehydrogenase; Medium and short-chain L-3-hydroxyacyl-coenzyme A dehydrogenase; Short-chain 3-hydroxyacyl-CoA dehydrogenase; EC 1.1.1.35 from Sus scrofa (Pig) (see paper)
41% identity, 96% coverage: 3:282/293 of query aligns to 27:313/314 of P00348
1f0yA L-3-hydroxyacyl-coa dehydrogenase complexed with acetoacetyl-coa and NAD+ (see paper)
42% identity, 96% coverage: 3:282/293 of query aligns to 4:290/291 of 1f0yA
1f17A L-3-hydroxyacyl-coa dehydrogenase complexed with nadh (see paper)
42% identity, 96% coverage: 3:282/293 of query aligns to 4:290/293 of 1f17A
1f12A L-3-hydroxyacyl-coa dehydrogenase complexed with 3-hydroxybutyryl-coa (see paper)
42% identity, 96% coverage: 3:282/293 of query aligns to 4:290/293 of 1f12A
Q16836 Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial; HCDH; Medium and short-chain L-3-hydroxyacyl-coenzyme A dehydrogenase; Short-chain 3-hydroxyacyl-CoA dehydrogenase; EC 1.1.1.35 from Homo sapiens (Human) (see 7 papers)
42% identity, 96% coverage: 3:282/293 of query aligns to 27:313/314 of Q16836
P9WNP7 3-hydroxybutyryl-CoA dehydrogenase; Beta-hydroxybutyryl-CoA dehydrogenase; BHBD; EC 1.1.1.157 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
40% identity, 96% coverage: 3:282/293 of query aligns to 5:286/286 of P9WNP7
8oqsB Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with fragment-m-83 (see paper)
38% identity, 98% coverage: 3:290/293 of query aligns to 340:629/735 of 8oqsB
Sites not aligning to the query:
4b3iA Crystal structure of mycobacterium tuberculosis fatty acid beta- oxidation complex with coenzymea bound at the hydratase active sites (see paper)
38% identity, 98% coverage: 3:290/293 of query aligns to 336:625/731 of 4b3iA
Sites not aligning to the query:
8oqoA Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with fragment-m-49 (see paper)
38% identity, 98% coverage: 3:290/293 of query aligns to 333:622/727 of 8oqoA
Sites not aligning to the query:
8pf8A Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with fragment-m-72 (see paper)
38% identity, 98% coverage: 3:290/293 of query aligns to 334:623/729 of 8pf8A
Sites not aligning to the query:
8oquA Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with fragment-m-92 (see paper)
38% identity, 98% coverage: 3:290/293 of query aligns to 335:624/730 of 8oquA
Sites not aligning to the query:
8oqtA Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with fragment-m-91
38% identity, 98% coverage: 3:290/293 of query aligns to 334:623/729 of 8oqtA
Sites not aligning to the query:
8oqnA Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with fragment-m-53 (see paper)
38% identity, 98% coverage: 3:290/293 of query aligns to 334:623/729 of 8oqnA
Sites not aligning to the query:
8opvA Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with resveratrol (fragment-b-h11) (see paper)
38% identity, 98% coverage: 3:290/293 of query aligns to 334:623/729 of 8opvA
Sites not aligning to the query:
8opuA Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with sulfamethoxazole (fragment-b-e1) (see paper)
38% identity, 98% coverage: 3:290/293 of query aligns to 334:623/729 of 8opuA
Sites not aligning to the query:
>WP_093396490.1 NCBI__GCF_900114975.1:WP_093396490.1
MTIKKVFVMGAGLMGSGIAQVSAQAGYSVIMCDISREALDKATGNIRWSLEKFSEKGIIR
EPVDKVLDRITPTMEAEDASEADLAIEAVFENIDLKKEVFQKLDRILPEHAVLASNTSAI
PITTLASVTNRRDRVLGLHFFSPVPMMQAVEVIRAMTTSDETFETARKFVISLGKEPILV
HRDIPGFLINRINFCASLEAMRLVEAGIASVEDIDKGLRLASGRRMGIFETGDMVGLDVT
YGALMAMYEETKDPRWYPPAILRRKIQLGHLGRKTGRGWYVYDAQGNRIGPSE
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory